raver119 29e8e09db6
String changes (#3)
* initial commit

* additional data types & tensor type

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* next step

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* missing include

* sparse_to_dense

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* few more tests files

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* draft

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* numeric sparse_to_dense

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* comment

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* string sparse_to_dense version

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* CUDA DataBuffer expand

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* few tweaks for CUDA build

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* shape fn for string_split

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* one more comment

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* string_split indices

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* next step

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* test passes

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* few rearrangements for databuffer implementations

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* DataBuffer: move inline methods to common implementations

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* add native DataBuffer to Nd4j presets

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* DataBuffer creation

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* use DataBuffer for allocation

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* cpu databuffer as deallocatable

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* DataBuffer setters for bufers

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* couple of wrappers

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* DataBuffers being passed around

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* Bunch of ByteBuffer-related signatures gone

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* - few more Nd4j signatures removed
- minor fix for bfloat16

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* nullptr pointer is still a pointer, but 0 as address :)

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* one special test

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* empty string array init

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* one more test in cpp

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* memcpy instead of databuffer swap

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* special InteropDataBuffer for front-end languages

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* few tweaks for java

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* pointer/indexer actualization

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* CustomOp returns list for inputArumgents and outputArguments instead of array

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* redundant call

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* print_variable op

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* - view handling (but wrong one)
- print_variable java wrapper

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* one more test

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* - empty arrays handling

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* - deserialization works now

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* minor fix

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* meh

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* one more fix

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* initial cuda commit

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* print_variable message validation

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* CUDA views

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* CUDA special buffer size

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* minor update to match master changes

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* - consider arrays always actual on device for CUDA
- additional PrintVariable constructor
- CudaUtf8Buffer now allocates host buffer by default

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* meh

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* - print_variable now allows print from device

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* InteropDataBuffer data type fix

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* ...

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* disable some debug messages

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* master pulled in

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* couple of new methods for DataBuffer interop

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* java side

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* offsetted constructor

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* new CUDA deallocator

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* CUDA backend torn apart

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* CUDA backend torn apart 2

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* CUDA backend torn apart 3

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* - few new tests
- few new methods for DataBuffer management

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* few more tests + few more tweaks

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* two failing tests

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* one more test

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* two failing tests pass

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* now we pass DataBuffer to legacy ops too

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* Native DataBuffer for legacy ops, Java side

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* CPU java side update

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* CUDA java side update

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* no more prepare/register action on java side

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* NDArray::prepare/register use now accepts vectors

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* InteropDataBuffer now has few more convenience methods

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* java bindings update

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* tick device in NativeOps

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* Corrected usage of OpaqueBuffer for tests.

* Corrected usage of OpaqueBuffer for java tests.

* NativeOpsTests fixes.

* print_variable now returns scalar

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* one more test

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* compat_string_split fix for CUDA

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* - CUDA execScalar fix
- CUDA lazyAllocateHostPointer now checks java indexer/pointer instead of native pointer

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* legacy ops DataBuffer migration prototype

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* ignore device shapeinfo coming from java

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* minor fix

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* minor transformAny fix

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* minor tweak for lazy host allocation

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* - DataBuffer::memcpy method
- bitcast now uses memcpy

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* - IndexReduce CUDA dimension buffer fix

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* views for CPU and CUDA

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* less spam

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* optional memory init

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* async memset

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* - SummaryStats CUDA fix
- DataBuffer.sameUnderlyingData() impl
- execBroadcast fix

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* - reduce3All fix
switch to CUDA 10 temporarily

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* CUDA version

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* proper memory deallocator registration

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* HOST_ONLY workspace allocation

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* temp commit

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* few conflicts resolved

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* few minor fixes

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* one more minor fix

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* NDArray permute should operate on JVM primitives

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* - create InteropDataBuffer for shapes as well
- update pointers after view creation in Java

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* - addressPointer temporary moved to C++

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* CUDA: don't account offset twice

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* CUDA: DataBuffer pointer constructor updated

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* CUDA NDArray.unsafeDuplication() simplified

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* CUDA minor workspace-related fixes

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* CPU DataBuffer.reallocate()

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* print_affinity op

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* print_affinity java side

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* CUDA more tweaks for data locality

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* - compat_string_split tweak
- CudaUtf8Buffer update

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* INDArray.close() mechanic restored

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* one more test fixed

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* - CUDA DataBuffer.reallocate() updated
- cudaMemcpy (synchronous) restored

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* one last fix

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* bad import removed

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* another small fix

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* one special test

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* fix bad databuffer size

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* release primaryBuffer on replace

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* higher timeout

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* disable timeouts

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* dbCreateView now validates offset and length of a view

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* additional validation for dbExpand

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* restore timeout back again

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* smaller distribution for rng test to prevent timeouts

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* CUDA DataBuffer::memcpy now copies to device all the time

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* OpaqueDataBuffer now contains all required methods for interop

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* some javadoc

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* GC on failed allocations

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* minoe memcpu tweak

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* one more bitcast test

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* - NDArray::deviceId() propagation
- special multi-threaded test for data locality checks

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* DataBuffer additional syncStream

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* DataBuffer additional syncStream

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* one ignored test

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* skip host alloc for empty arrays

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* ByteBuffer support is back

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* DataBuffer::memcpy minor fix

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* few minor prelu/bp tweaks

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* nullify-related fixes

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* PReLU fixes (#157)

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* Build fixed

* Fix tests

* one more ByteBuffer signature restored

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* nd4j-jdbc-hsql profiles fix

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* nd4j-jdbc-hsql profiles fix

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* PReLU weight init fix

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* Small PReLU fix

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* - INDArray.migrate() reactivated
- DataBuffer::setDeviceId(...) added
- InteropDataBuffer Z syncToDevice added for views

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* missed file

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* Small tweak

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* cuda 10.2

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* minor fix

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Co-authored-by: shugeo <sgazeos@gmail.com>
Co-authored-by: Alex Black <blacka101@gmail.com>
Co-authored-by: Alexander Stoyakin <alexander.stoyakin@gmail.com>
2020-01-04 13:27:50 +03:00

123 lines
5.3 KiB
C++

/*******************************************************************************
* Copyright (c) 2015-2019 Skymind, Inc.
*
* This program and the accompanying materials are made available under the
* terms of the Apache License, Version 2.0 which is available at
* https://www.apache.org/licenses/LICENSE-2.0.
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS, WITHOUT
* WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the
* License for the specific language governing permissions and limitations
* under the License.
*
* SPDX-License-Identifier: Apache-2.0
******************************************************************************/
//
// @author raver119@gmail.com
//
#include <ops/declarable/helpers/sparse_to_dense.h>
#include <helpers/StringUtils.h>
#include <helpers/ShapeUtils.h>
namespace nd4j {
namespace ops {
namespace helpers {
template <typename X, typename I>
static void fill_(const void *vvalues, const void *vindices, void *voutput, const Nd4jLong *zShapeInfo, uint8_t rank, uint64_t length) {
auto values = reinterpret_cast<const X*>(vvalues);
auto indices = reinterpret_cast<const I*>(vindices);
auto output = reinterpret_cast<X*>(voutput);
Nd4jLong coords[MAX_RANK];
uint64_t pos = 0;
for (uint64_t e = 0L; e < length; e++) {
// indices come in blocks
for (uint8_t p = 0; p < rank; p++) {
coords[p] = indices[pos++];
}
// fill output at given coords with sparse value
output[shape::getOffset(zShapeInfo, coords)] = values[e];
}
}
void compat_sparse_to_dense(const NDArray &values, const NDArray &indices, NDArray *def, NDArray &output) {
// make sure host buffer is updated
values.syncToHost();
indices.syncToHost();
auto rank = output.rankOf();
if (output.isS()) {
// string case is not so trivial, since elements might, and probably will, have different sizes
auto numValues = values.lengthOf();
auto numElements = output.lengthOf();
// first of all we calculate final buffer sizes and offsets
auto defaultLength = def == nullptr ? 0 : StringUtils::byteLength(*def);
auto valuesLength = StringUtils::byteLength(values);
auto bufferLength = defaultLength * (output.lengthOf() - numValues) + valuesLength;
auto headerLength = ShapeUtils::stringBufferHeaderRequirements(numElements);
// now we make sure our output buffer can hold results
output.dataBuffer()->expand( bufferLength + headerLength);
std::vector<Nd4jLong> outputCoords(rank);
std::vector<Nd4jLong> valueCoords(rank);
auto offsetsBuffer = output.bufferAsT<Nd4jLong>();
auto dataBuffer = reinterpret_cast<uint8_t*>(offsetsBuffer + output.lengthOf());
offsetsBuffer[0] = 0;
// getting initial value coords
for (int e = 0; e < rank; e++)
valueCoords[e] = indices.e<Nd4jLong>(e);
// write results individually
for (uint64_t e = 0; e < numElements; e++) {
auto vIndex = shape::coords2index(output.shapeInfo(), valueCoords.data());
auto cLength = 0L;
std::string str;
if (vIndex == e) {
// we're writing down sparse value here
str = values.e<std::string>(e);
} else {
// we're writing down default value if it exists
if (def != nullptr)
str = def->e<std::string>(0);
else
str = "";
}
// TODO: make it unicode compliant
memcpy(&dataBuffer[offsetsBuffer[e]], str.c_str(), str.length());
// writing down offset
offsetsBuffer[e+1] = cLength;
}
} else {
// numeric case is trivial, since all elements have equal sizes
// write out default values, if they are present
if (def != nullptr) {
output.assign(def);
// make sure output is synced back
output.syncToHost();
}
// write out values
BUILD_DOUBLE_SELECTOR(values.dataType(), indices.dataType(), fill_, (values.getBuffer(), indices.getBuffer(), output.buffer(), output.getShapeInfo(), rank, values.lengthOf()), LIBND4J_TYPES, INDEXING_TYPES);
}
// copy back to device, if there's any
output.syncToDevice();
}
}
}
}