cavis/deeplearning4j
Alex Black 1170827c18 Merge master to upstream (#7945)
* Shugeo strided slice zeros (#14)

* Modified strided_slice op to properly work with empty-like shapes.

* Fixed test for reduce_mean with empty-like input.

* [WIP] Last merge (#15)

* correct logsoftmax looss (#2)

* Small SameDiff listener fix (#4)

* Various fixes (#6)

* #7839 Fix for asXMatrix and tests

* #7866 EmbeddingSequenceLayer dtype fix + test

* #7856 SameDiff save/load stream methods

* #7859 RegressionEvaluation rank 4 fix + tests + axis configuration

* EvaluationBinary 3d/4d

* More evaluation 3d/4d tests

* #7847 Evaluation empty checks

* Small test ifx

* #7848 Fix median edge case

* Improve DL4J samediff layer tests

* [WIP] FastText wrapper implemented (#8)

* FastText implemented

* Some fixes

* Fix shapes for wordsNearest

* Validation of input vectors

* Fixes

* Fixed test

* Thread tagged

* Some tweaks

* setContextClassLoader for DeallocatorServiceThread

* Numpy format tests (#1)

* Various fixes (#11)

* #7852 SameDiff gather fix

* #7892 SameDiff placeholder to constant conversion

* #7890 validate input rank for MLN/CG init methods

* Fix broken permute shape calculation

* Permute and gather fixes

* Tests

* #7850 LogSumExp fix + test

* Handful of test fixes

* Empty arrays with non-scalar shapes (#10)

* minor rearrangements for lambdas

* empty tensors with non-scalar shapes

* numpy empty tensors with non-scalar shapes

* few more empty tweaks

* Small fixes

* conv3d signature update

* micro fix in batchnorm mkldnn

* Import fixes

* Fix

* MKL-DNN update

* Small fill fix

* fill with empty input + test

* Fixes

* Small error improvement

* Fix

* one special test

* couple of fixes for lstm

* Rewrite TFGraphMapper.getNDArrayFromTensor to be maintainable and less error prone

* Fixes

* FP16

* Unsigned

* BFloat16

* Fill op - empty tweaks

* - couple of fixes for empty arrays construction
- stack updated

* strided slice fix

* one transform test

* provide method for reducing shapeInfo in case of input array is empty

* Fixed reduceAlongDimensions to use empty input properly.

* couple of broadcast tests

* couple of tests broadcast tests + tweak to make them pass

* add check of non-empty to methods producing sub-arrays

* Fixed reshapeC with zeros in shape.

* complete empty check in reduce_... legacy ops

* Concat and cumsum/prod

* Tweak to empty shape inference on import

* add empty check to the rest of reduce legacy ops

* one more test

* correct typo in evalReduceShapeInfoEmpty

* Added tests for reduce_* ops to tests with zero shapes.

* few more tests for empty reductions

* Fixed strided_slice op with empty case and tests.

* one more empty reduction test

* Fixed strided_slice test.

* add empty check to NDArray::reshapei

* infOrMax

* empty min/max with infinity tests

* made unstack working correctly with empty arrays

* few IndexReduce tests + tweaks for empty shapes

* add test for empty concat

* few tests fixed

* Validation fix for reductions on empty shapes

* Reverse fix

* Reduction shape calc fixes

* SameDiff.generateOutputVariable: don't use shape function to determine number of outputs

* Range fix

* - NDArray constructor updated for scalars/empty arrays
- few tests fixed

* More fixes

* Empty creator fixes

* concat fix

* concat fix

* TF import tests: allow 'both all NaN' and 'both all inf' to pass

* Slice, zero fraction, and reshape fixes

* transpose, gather

* Zero fraction

* scalar cast fix

* Empty reduction axis support

* few more tests fixed

* Fixed input checks conforming with TF for concat op and tests.

* few tests fixed

* matmul scalar shape fix

* Fixed checkout for data type and scalarity with concat to allow non-empty scalars with vector concats.

* broadcast bool fix

* few more tests

* few more tests

* correct evalReduceShapeInfoEmpty

* argmax/argmin + tests

* one more empty edge case + one more test

* argmax/argmin/realdiv_bp tweaks

* empty reshape test + fix

* Helper fixes

* Small fixes

* Gather test fix

* Gather test fix

* Small fixes

* reduce scalar zero values

* scalar mean workaround

* Remove debug code

* along dim mean workaround

* one more test

* - equalsTo() tweak for empty arrays
- one more test

* broadcast tweaks

* [WIP] Fixing outstanding issues for NLP (#9)

* Avoid using not-inited objects

* Test fixed.

* Redundant method avoided for models like FastText

* KMeans++ implementation

* KMeans++ implementation

* Disable parallel execution

* KMeans++

* Tests

* Dev branch merge (#16)

* SameDiff: convertDataType and gradient check util improvements (#12)

* GradCheck util improvements

* StopGradient constructor + test

* SameDiff: Add datatype conversion

* Javadoc and add DataType.isNumerical()

* Small fix

* Fix SameDiff TF import test cases intermediate naming (workaround for bad default)

* TFGraphTestAllHelper: check intermediates in execution order

* Add missing debug listener

* [WIP] lstmBlock fix + other changes (#13)

- fixes lstmBlock issue
- changes NDArray method reshape(), permute(), transpose() by making them return instance instead of pointer
- CheckNumerics op
- fixes for ReduceBool IsInfOrNan & IsFinite

* Small test fix

* CheckNumerics op wrapper

* Fix some issues on master (#17)

* Fix DataVec test issue

* Fix issue with dl4j SameDiff output layer

* Dtype fix for lambda layers

* #7912 BertIterator dtype fix (use float32 not global default)

* [WIP] Next set of CUDA stuff (#7)

New CUDA implementations and improvements

* bad file

* Dev branch master merge (#23)

* SameDiff: convertDataType and gradient check util improvements (#12)

* GradCheck util improvements

* StopGradient constructor + test

* SameDiff: Add datatype conversion

* Javadoc and add DataType.isNumerical()

* Small fix

* Fix SameDiff TF import test cases intermediate naming (workaround for bad default)

* TFGraphTestAllHelper: check intermediates in execution order

* Add missing debug listener

* [WIP] lstmBlock fix + other changes (#13)

- fixes lstmBlock issue
- changes NDArray method reshape(), permute(), transpose() by making them return instance instead of pointer
- CheckNumerics op
- fixes for ReduceBool IsInfOrNan & IsFinite

* Small test fix

* CheckNumerics op wrapper

* Compatibility of deserialization (#18)

Signed-off-by: Alexander Stoyakin <alexander.stoyakin@gmail.com>

* SameDiff: add activation gradient checking support for debugging (#19)

* SameDiff gradient checker: first pass on activation gradient checks

* Fixes + tests for activation gradient checking

* Javadoc

* [WIP] Some nd4j data type corrections (#20)

* Adjust data type

* Set correct Data type.

* Size of proper data type.

* fix averaged cpu load (#22)

* SameDiff ops, TF import and fixes (#24)

* CheckNumerics tests + fixes + misc fixes

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Fake quant

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Fixes

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* FakeQuantWithMinMaxArgs

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* CheckNumerics fix

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Fix libnd4j ALL_INTS and ALL_FLOATS declaration (uint and bfloat types)

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Small fix

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Javadoc

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Exception tweak

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* fix

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Fix for out of scope stack allocated var use

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Ignores

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Ignore for known failing test (already logged issue)

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Merge upstream to fork (#25)

* Add thousand-separator commas to TotalParams (#7915)

* Add thousand-separator commas to TotalParams

The number of parameters can be quite large, and it would help the reading of the summary printout to have the TotalParams column & values at the bottom have thousand-separator-commas in them.

* Add thousand-separator commas to MultiLayerNetwork

Corresponding change to MultiLayerNetwork

Signed-off-by: Jxtps Jxtps <jxtps435@gmail.com>

* Update contributing and issue/PR templates (#7934)

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Fix link to AdaDelta paper (#7942)

Fix link to AdaDelta paper hosted on matthewzeiler.com

Signed-off-by: Jxtps

* Fixes, and ignores for known/logged failing issues (#7943)

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* SameDiff + DL4J/SameDiff: Multiple fixes (#28)

* #7919 HDF5 attribute buffer length fix

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* #7909 Arbiter constructor exception ux improvements

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* #7925 RNN output layer length checks

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* #7939 Add listener for validating inputs are not incorrectly modified

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* #7939 Integrate NonInplaceValidationListener into tests

* #7844 DL4J SameDiff fixes for variable minibatch size

* DL4J SameDiff fixes - ensure gradient for input placeholder is available

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Tweaks to ExternalErrorsFunction - use placeholders, make more robust

* Another fix

* More fixes

* More SameDiff/DL4J fixes

* Scope out scalar array creation in BaseScalarOp

* Remove debug code

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* [WIP] Final dev branch merge (#29)

* SameDiff: convertDataType and gradient check util improvements (#12)

* GradCheck util improvements

* StopGradient constructor + test

* SameDiff: Add datatype conversion

* Javadoc and add DataType.isNumerical()

* Small fix

* Fix SameDiff TF import test cases intermediate naming (workaround for bad default)

* TFGraphTestAllHelper: check intermediates in execution order

* Add missing debug listener

* [WIP] lstmBlock fix + other changes (#13)

- fixes lstmBlock issue
- changes NDArray method reshape(), permute(), transpose() by making them return instance instead of pointer
- CheckNumerics op
- fixes for ReduceBool IsInfOrNan & IsFinite

* Small test fix

* CheckNumerics op wrapper

* Compatibility of deserialization (#18)

Signed-off-by: Alexander Stoyakin <alexander.stoyakin@gmail.com>

* SameDiff: add activation gradient checking support for debugging (#19)

* SameDiff gradient checker: first pass on activation gradient checks

* Fixes + tests for activation gradient checking

* Javadoc

* [WIP] Some nd4j data type corrections (#20)

* Adjust data type

* Set correct Data type.

* Size of proper data type.

* fix averaged cpu load (#22)

* [WIP] Multiple dataset iterators (#27)

* Splitting dataset into arbitrary number

* Fixes

* Multiple split of iterator

* Test

* Test

* Some fixes

* signature change

* one more tweak

Signed-off-by: raver119 <raver119@gmail.com>

* one more test for sequential use of DataSetIteratorSplitter

Signed-off-by: raver119 <raver119@gmail.com>

* Fixes

* Fixes

* one more test for Alexander

Signed-off-by: raver119 <raver119@gmail.com>

* Some fixes

* Some fixes

* one more test for Alexander

Signed-off-by: raver119 <raver119@gmail.com>

* minor test fix

Signed-off-by: raver119 <raver119@gmail.com>

* Some fixes

* Some fixes

* couple of assertions tweaked

Signed-off-by: raver119 <raver119@gmail.com>

* MDS splitter test :/

Signed-off-by: raver119 <raver119@gmail.com>

* Minor refactoring

* Multi dataset

* Some fixes

* More tests

* Small number of test fixes/improvements (failures on CI) (#31)

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* [WIP] More CUDA stuff (#26)

* initial commit

Signed-off-by: raver119 <raver119@gmail.com>

* LRN BP CUDA

Signed-off-by: raver119 <raver119@gmail.com>

* less memory

Signed-off-by: raver119 <raver119@gmail.com>

* Fixed bug with crop_and_resize op helper.

* get rid of unnecessary index-calculation dunction

Signed-off-by: Yurii <yurii@skymind.io>

* Fixed sort with nth_element cuda-based helper.

* Refactored nth_element.

* Refactored nth_element op and tests.

* Modified usage of dim array with sortTad routine.

* Refactored main routine of helper for non_max_image_suppression op.

* non_max_image_suppression op helper with cuda kernel implementation. Initial revision.

* fix vol2col cuda kernel

* meh

Signed-off-by: raver119 <raver119@gmail.com>

* topK concept

Signed-off-by: raver119 <raver119@gmail.com>

* unsorted topK with scanWitdh of 1

Signed-off-by: raver119 <raver119@gmail.com>

* correct vol2col tests

* sorted/unsorted topK

Signed-off-by: raver119 <raver119@gmail.com>

* implementation and fixing col2im/col2vol

* Corrected usage flags with input/output with reverse op.

* dup is const now

Signed-off-by: raver119 <raver119@gmail.com>

* percentile op

Signed-off-by: raver119 <raver119@gmail.com>

* group tests for mapool2d

Signed-off-by: Yurii <yurii@skymind.io>

* special test for george

Signed-off-by: raver119 <raver119@gmail.com>

* less threads for sortTad

Signed-off-by: raver119 <raver119@gmail.com>

* provide conv2d for cuda

Signed-off-by: Yurii <yurii@skymind.io>

* remove auther in sort tad kernel code

Signed-off-by: Yurii <yurii@skymind.io>

* provide depthwise_conv2d for cuda

Signed-off-by: Yurii <yurii@skymind.io>

* - max_pooling_with_argmax
- null check for special use

Signed-off-by: raver119 <raver119@gmail.com>

* dts cuda

Signed-off-by: raver119 <raver119@gmail.com>

* provide sconv2d for cuda

Signed-off-by: Yurii <yurii@skymind.io>

* std cuda

Signed-off-by: raver119 <raver119@gmail.com>

* Refactored non_max_suppression op to conform TF implementation.

* Improved suppression helper.

* provide pooling3d for cuda

Signed-off-by: Yurii <yurii@skymind.io>

* minor lstm rearrangements

Signed-off-by: raver119 <raver119@gmail.com>

* more of minor lstm rearrangements

Signed-off-by: raver119 <raver119@gmail.com>

* (bi)dynamic_rnn

Signed-off-by: raver119 <raver119@gmail.com>

* templates init order

Signed-off-by: raver119 <raver119@gmail.com>

* Refactored non_max_suppression op.

* Added cuda kernel for non_max_suppression.

* CPU sort by key/value

Signed-off-by: raver119 <raver119@gmail.com>

* CPU sort TAD by key/value

Signed-off-by: raver119 <raver119@gmail.com>

* CPU sort TAD by key/value tests

Signed-off-by: raver119 <raver119@gmail.com>

* Eliminate compiler error with cuda implementation.

* - repaired gradCheck in cuda
- provide conv2d_bp for cuda

Signed-off-by: Yurii <yurii@skymind.io>

* missed signature

Signed-off-by: raver119 <raver119@gmail.com>

* provide depthwise_conv2d_bp for cuda

Signed-off-by: Yurii <yurii@skymind.io>

* Implementation of lup helper with cuda kernel. Initial commit.

* further work on backprops for convolutions

Signed-off-by: Yurii <yurii@skymind.io>

* CUDA linear sort by key/val

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* CUDA tad sort by key/val

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* start providing of backprop for pooling2d/3d

Signed-off-by: Yurii <yurii@skymind.io>

* Added atomicAdd for bool datatype.

* dynamic partition concept

Signed-off-by: raver119 <raver119@gmail.com>

* dynamic partition concept

Signed-off-by: raver119 <raver119@gmail.com>

* dynamic partition scalar CUDA

Signed-off-by: raver119 <raver119@gmail.com>

* important comment

Signed-off-by: raver119 <raver119@gmail.com>

* fix pooling2d/3d backprop helpers

Signed-off-by: Yurii <yurii@skymind.io>

* Added non-linear test with dynamic_partition.

* Improved test for dynamic_partition.

* dynamic_partition TAD concept

Signed-off-by: raver119 <raver119@gmail.com>

* - dynamic_partition TAD CUDA impl
- dynamic_partition TAD CPU fix

Signed-off-by: raver119 <raver119@gmail.com>

* - rewrite cpu code for usampling2d/3d
- write cuda code for usampling2d/3d

Signed-off-by: Yurii <yurii@skymind.io>

* dynamic_stitch CUDA vector case

Signed-off-by: raver119 <raver119@gmail.com>

* dynamic_stitch CUDA TAD case concept

Signed-off-by: raver119 <raver119@gmail.com>

* dynamic_stitch CUDA TAD case impl

Signed-off-by: raver119 <raver119@gmail.com>

* Added tests for dynamic_stitch 3D-4D cases.

* minor tests tweaks

Signed-off-by: raver119 <raver119@gmail.com>

* Fixed type check for dynamic stitch.

* min/max bp

Signed-off-by: raver119 <raver119@gmail.com>

* rewrite code for upsampling2d/3d cpu

Signed-off-by: Yurii <yurii@skymind.io>

* reduce min/max/norm_max bp

Signed-off-by: raver119 <raver119@gmail.com>

* lup implementation. Additional enhancements.

* provide code for upsamling2d/3d backprop

Signed-off-by: Yurii <yurii@skymind.io>

* weightedCrossEntropyWithLogits

Signed-off-by: raver119 <raver119@gmail.com>

* Fixed template math atomicMul for 64bit ints.

* Refactored dynamic_partition_bp op.

* inverseBroadcast fix

Signed-off-by: raver119 <raver119@gmail.com>

* DynamicPartitionBP test datatype fixed.

* - nd4j_atomicMul Windows fix
- cpu/NDArrayLambda.hpp excluded from CUDA

Signed-off-by: raver119 <raver119@gmail.com>
2019-06-27 18:37:04 +03:00
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deeplearning4j-data Merge master to upstream (#7945) 2019-06-27 18:37:04 +03:00
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README.md

Eclipse Deeplearning4J: Neural Networks for Java/JVM

Join the chat at https://gitter.im/deeplearning4j/deeplearning4j Maven Central Javadoc

Eclipse Deeplearning4J is part of the Skymind Intelligence Layer, along with ND4J, DataVec, Arbiter and RL4J. It is an Apache 2.0-licensed, open-source, distributed neural net library written in Java and Scala. By contributing code to this repository, you agree to make your contribution available under an Apache 2.0 license.

Deeplearning4J integrates with Hadoop and Spark and runs on several backends that enable use of CPUs and GPUs. The aim is to create a plug-and-play solution that is more convention than configuration, and which allows for fast prototyping.

The most recent stable release in Maven Central is 0.9.1, and the current master on Github can be built from source.

For more info, see: https://docs.skymind.ai/docs


Using Eclipse Deeplearning4j

To get started using Deeplearning4j, please go to our Quickstart. You'll need to be familiar with a Java automated build tool such as Maven and an IDE such as IntelliJ.

Main Features

  • Versatile n-dimensional array class
  • GPU integration (supports devices starting from Kepler, cc3.0. You can check your device's compute compatibility here.)

Modules

  • datavec = Library for converting images, text and CSV data into format suitable for Deep Learning
  • nn = core neural net structures MultiLayer Network and Computation graph for designing Neural Net structures
  • core = additional functionality building on deeplearning4j-nn
  • modelimport = functionality to import models from Keras
  • nlp = natural language processing components including vectorizers, models, sample datasets and renderers
  • scaleout = integrations
    • spark = integration with Apache Spark versions 1.3 to 1.6 (Spark 2.0 coming soon)
    • parallel-wraper = Single machine model parallelism (for multi-GPU systems, etc)
    • aws = loading data to and from aws resources EC2 and S3
  • ui = provides visual interfaces for tuning models. Details here

Documentation

Documentation is available at deeplearning4j.org and JavaDocs. Open-source contributors can help us improve our documentation for Deeplearning4j by sending pull requests for the DL4J website here and ND4J here.

Support

We are not supporting Stackoverflow right now. Github issues should focus on bug reports and feature requests. Please join the community on Gitter, where we field questions about how to install the software and work with neural nets. For support from Skymind, please see our contact page.

Installation

To install Deeplearning4J, see our Quickstart and below. More information can be found on the ND4J web site as well as here.

Use Maven Central Repository

Search Maven Central for deeplearning4j to get a list of dependencies.

Add the dependency information to your pom.xml file. We highly recommend downloading via Maven unless you plan to help us develop DL4J. An easy way to get up-to-date dependencies is to use the ones listed in our dl4j-examples POM.


Contribute

  1. Check for open issues or open a fresh one to start a discussion around a feature idea or a bug.
  2. If you feel uncomfortable or uncertain about an issue or your changes, don't hesitate to contact us on Gitter using the link above.
  3. Fork the repository on GitHub to start making your changes (branch off of the master branch).
  4. Write a test that shows the bug was fixed or the feature works as expected.
  5. Note the repository follows the Google Java style with two modifications: 120-char column wrap and 4-spaces indentation. You can format your code to this format by typing mvn formatter:format in the subproject you work on, by using the contrib/formatter.xml at the root of the repository to configure the Eclipse formatter, or by using the Intellij plugin.
  6. Send a pull request and bug us on Gitter until it gets merged and published. :)
  7. Add technical documentation on the Deeplearning4j website and fix any typos you see.