/******************************************************************************* * Copyright (c) 2015-2018 Skymind, Inc. * * This program and the accompanying materials are made available under the * terms of the Apache License, Version 2.0 which is available at * https://www.apache.org/licenses/LICENSE-2.0. * * Unless required by applicable law or agreed to in writing, software * distributed under the License is distributed on an "AS IS" BASIS, WITHOUT * WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the * License for the specific language governing permissions and limitations * under the License. * * SPDX-License-Identifier: Apache-2.0 ******************************************************************************/ // // @author George A. Shulinok , created on 4/18/2019 // #include namespace nd4j { namespace ops { namespace helpers { //////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// // count rows kernel - count input pRows and pCols and put result onto pRowCounts // pRowCounts - array of ints, with length N // pRows - array of ints with length N, vals from 0 to N-1 // pCols - array of ints with length < N and vals between 0 and max(pRows) // static __global__ void countRowsKernel(int* pRowCounts, int const* pRows, int const* pCols, Nd4jLong N) { auto start = blockIdx.x * blockDim.x; auto step = blockDim.x * gridDim.x; for (int n = threadIdx.x + start; n < N; n += step) { int begin = pRows[n];//->e(n); int end = pRows[n + 1];//rowP->e(n + 1); for (int i = begin; i < end; i++) { bool present = false; // loop between near pRows for (int m = pRows[pCols[i]]; m < pRows[pCols[i] + 1]; m++) if (pCols[m] == n) { // mark index as existed with columns array present = true; break; } atomicAdd(&pRowCounts[n], 1); if (!present) // increment row counter for given index atomicAdd(&pRowCounts[pCols[i]], 1); } } } //////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// // row counter caller Nd4jLong barnes_row_count(const NDArray* rowP, const NDArray* colP, Nd4jLong N, NDArray& rowCounts) { int* pRowCounts = reinterpret_cast(rowCounts.specialBuffer()); int const* pRows = reinterpret_cast(rowP->getSpecialBuffer()); int const* pCols = reinterpret_cast(colP->getSpecialBuffer()); auto stream = rowCounts.getContext()->getCudaStream(); countRowsKernel<<<1, 1, 128, *stream>>>(pRowCounts, pRows, pCols, N); NDArray numElementsArr = rowCounts.sumNumber(); //reduceAlongDimension(reduce::Sum, {}); //rowCounts.printBuffer("Row counts"); auto numElements = numElementsArr.e(0); return numElements; } //////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// // extend symRowP with pRowCounts array vals // pRowCounts - int array with length N // symRowP - int array with length N+1 // N - given array length // static __global__ void fillUpsymRow(int const* pRowCounts, int* symRowP, int N) { auto start = blockIdx.x * blockDim.x + threadIdx.x; auto step = blockDim.x * gridDim.x; for (int n = start; n < N + 1; n += step) { // to avoid race condition use shift only for given index symRowP[n] = 0; for (int i = 0; i < n; i++) atomicAdd(&symRowP[n], pRowCounts[i]); } } //////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// // symmetrize routine kernel // pRows - rows buffer (ints) // pCols - column buffer (ints) with vals between 0 and max(pRows) // pVals - values vector (floats) // symRowP - ints, shifted pRows // symColP - ints, shifted pCols, // offset - ints, shitfs // pOutput - result matrix (floats) // N - pRows length // template static __global__ void symmetrizeKernel(int const* pRows, int const* pCols, T const* pVals, int* symRowP, int* symColP, int* offset, T* pOutput, int N) { auto start = blockIdx.x * blockDim.x + threadIdx.x; auto step = blockDim.x * gridDim.x; for (int n = start; n < N; n += step) { int begin = pRows[n]; int bound = pRows[n + 1]; for (int i = begin; i < bound; i++) { bool present = false; int colPI = pCols[i]; int start = pRows[colPI]; int end = pRows[colPI + 1]; for (int m = start; m < end; m++) { if (pCols[m] == n) { present = true; if (n <= colPI) { symColP[symRowP[n] + offset[n]] = colPI; symColP[symRowP[colPI] + offset[colPI]] = n; pOutput[symRowP[n] + offset[n]] = pVals[i] + pVals[m]; pOutput[symRowP[colPI] + offset[colPI]] = pVals[i] + pVals[m]; } } } // If (colP[i], n) is not present, there is no addition involved if (!present) { symColP[symRowP[n] + offset[n]] = colPI; symColP[symRowP[pCols[i]] + offset[colPI]] = n; pOutput[symRowP[n] + offset[n]] = pVals[i]; pOutput[symRowP[colPI] + offset[colPI]] = pVals[i]; } // Update offsets if (!present || (present && n <= colPI)) { atomicAdd(&offset[n], 1); if (colPI != n) atomicAdd(&offset[colPI], 1); } } } } //////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// // symmetrize algorithm itself // template static void barnes_symmetrize_(const NDArray* rowP, const NDArray* colP, const NDArray* valP, Nd4jLong N, NDArray* outputRows, NDArray* outputCols, NDArray* outputVals, NDArray* rowCounts) { int const* pRows = reinterpret_cast(rowP->getSpecialBuffer()); int* symRowP = reinterpret_cast(outputRows->specialBuffer()); int* pRowCounts = reinterpret_cast(rowCounts->specialBuffer()); auto stream = outputCols->getContext()->getCudaStream(); // fill up syRowP array fillUpsymRow<<<1, N, 128, *stream>>>(pRowCounts, symRowP, N); outputRows->syncToHost(); // outputRows->printBuffer("output rows"); int* symColP = reinterpret_cast(outputCols->specialBuffer()); // outputRows->printBuffer("SymRows are"); int const* pCols = reinterpret_cast(colP->getSpecialBuffer()); T const* pVals = reinterpret_cast(valP->getSpecialBuffer()); T* pOutput = reinterpret_cast(outputVals->specialBuffer()); //std::vector rowCountsV = rowCounts->getBufferAsVector(); auto offsetArr = NDArrayFactory::create('c', {N}); int* offset = reinterpret_cast(offsetArr.specialBuffer()); // symmetrize itself symmetrizeKernel<<<1, 1, 1024, *stream>>>(pRows, pCols, pVals, symRowP, symColP, offset, pOutput, N); } //////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// // symmetrize caller and adoption // void barnes_symmetrize(const NDArray* rowP, const NDArray* colP, const NDArray* valP, Nd4jLong N, NDArray* outputRows, NDArray* outputCols, NDArray* outputVals, NDArray* rowCounts) { BUILD_SINGLE_SELECTOR(valP->dataType(), barnes_symmetrize_, (rowP, colP, valP, N, outputRows, outputCols, outputVals, rowCounts), NUMERIC_TYPES); *outputVals /= 2.0; } BUILD_SINGLE_TEMPLATE(template void barnes_symmetrize_, (const NDArray* rowP, const NDArray* colP, const NDArray* valP, Nd4jLong N, NDArray* outputRows, NDArray* outputCols, NDArray* outputVals, NDArray* rowCounts), NUMERIC_TYPES); //////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// // edge forces implementation // template static __global__ void edgeForcesKernel(int const* pRows, int const* pCols, T const* dataP, T const* vals, T* outputP, int N, int colCount, int rowSize) { // std::vector buffer(colCount); auto start = blockIdx.x * blockDim.x + threadIdx.x; auto step = blockDim.x * gridDim.x; for (int n = start; n < N; n += step) { int start = pRows[n]; int end = pRows[n + 1]; int shift = n * colCount; for (int i = start; i < end; i++) { T const* thisSlice = dataP + pCols[i] * colCount; T res = 1; for (int k = 0; k < colCount; k++) { auto valTemp = dataP[shift + k] - thisSlice[k];//thisSlice[k]; res += valTemp * valTemp; // (dataP[shift + k] * dataP[shift + k] - 2 * dataP[shift + k] * thisSlice[k] + thisSlice[k] * thisSlice[k]) } res = vals[i] / res; for (int k = 0; k < colCount; k++) math::atomics::nd4j_atomicAdd(&outputP[shift + k], T((dataP[shift + k] - thisSlice[k]) * res)); } } } //////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// // edge forces algorithm // template static void barnes_edge_forces_(const NDArray* rowP, NDArray const* colP, NDArray const* valP, int N, NDArray const* data, NDArray* output) { NDArray::prepareSpecialUse({output}, {data, rowP, colP, valP, valP}); T const* dataP = reinterpret_cast(data->getSpecialBuffer()); T const* vals = reinterpret_cast(valP->getSpecialBuffer()); T* outputP = reinterpret_cast(output->specialBuffer()); int const* pRows = reinterpret_cast(rowP->getSpecialBuffer()); int const* pCols = reinterpret_cast(colP->getSpecialBuffer()); int colCount = data->columns(); //auto shift = 0; auto rowSize = sizeof(T) * colCount; auto stream = output->getContext()->getCudaStream(); edgeForcesKernel<<<1, 128, 1024, *stream>>>(pRows, pCols, dataP, vals, outputP, N, colCount, rowSize); NDArray::registerSpecialUse({output}, {rowP, colP, valP, data}); } //////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// // edge forces caller // void barnes_edge_forces(const NDArray* rowP, NDArray const* colP, NDArray const* valP, int N, NDArray* output, NDArray const& data) { // Loop over all edges in the graph BUILD_SINGLE_SELECTOR(output->dataType(), barnes_edge_forces_, (rowP, colP, valP, N, &data, output), FLOAT_TYPES); } BUILD_SINGLE_TEMPLATE(template void barnes_edge_forces_, (const NDArray* rowP, NDArray const* colP, NDArray const* valP, int N, NDArray const* data, NDArray* output), FLOAT_TYPES); //////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// // gains - run a function T((x + 2.) * nd4j::math::nd4j_sign(grad) != nd4j::math::nd4j_sign(eps)) + T(x * 0.8 * nd4j::math::nd4j_sign(grad) != nd4j::math::nd4j_sign(eps)); // for all members in input and put all in output // template void barnes_gains_(NDArray* input, NDArray* gradX, NDArray* epsilon, NDArray* output) { auto gainsInternal = LAMBDA_TTT(x, grad, eps) { T res = nd4j::math::nd4j_sign(grad) != nd4j::math::nd4j_sign(eps) ? x + T(.2) : x * T(.8); if(res < .01) res = .01; return res; }; input->applyTriplewiseLambda(gradX, epsilon, gainsInternal, output); } //////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// // gains caller void barnes_gains(NDArray* input, NDArray* gradX, NDArray* epsilon, NDArray* output) { BUILD_SINGLE_SELECTOR(input->dataType(), barnes_gains_, (input, gradX, epsilon, output), NUMERIC_TYPES); } BUILD_SINGLE_TEMPLATE(template void barnes_gains_, (NDArray* input, NDArray* gradX, NDArray* epsilon, NDArray* output), NUMERIC_TYPES); //////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// // cell contains - check cells for given point // bool cell_contains(NDArray* corner, NDArray* width, NDArray* point, Nd4jLong dimension) { auto cornerMinusWidth = *corner - *width; auto cornerPlusWidth = *corner + *width; // executes on host side, so sync all to host memory cornerMinusWidth.syncToHost(); cornerPlusWidth.syncToHost(); for (Nd4jLong i = 0; i < dimension; i++) { if (cornerMinusWidth.e(i) > point->e(i)) return false; if (cornerPlusWidth.e(i) < point->e(i)) return false; } return true; } } } }