Commit Graph

38 Commits (cf24728f353ddd47b6fc56fb7f16ea9b359abe2a)

Author SHA1 Message Date
Alex Black 88d3c4867f
Refactor packages to fix split package issues (#411)
* Refactor nd4j-common: org.nd4j.* -> org.nd4j.common.*

Signed-off-by: Alex Black <blacka101@gmail.com>

* Fix CUDA (missed nd4j-common package refactoring changes)

Signed-off-by: Alex Black <blacka101@gmail.com>

* nd4j-kryo: org.nd4j -> org.nd4j.kryo

Signed-off-by: Alex Black <blacka101@gmail.com>

* Fix nd4j-common for deeplearning4j-cuda

Signed-off-by: Alex Black <blacka101@gmail.com>

* nd4j-grppc-client: org.nd4j.graph -> org.nd4j.remote.grpc

Signed-off-by: Alex Black <blacka101@gmail.com>

* deeplearning4j-common: org.deeplearning4.* -> org.deeplearning4j.common.*

Signed-off-by: Alex Black <blacka101@gmail.com>

* deeplearning4j-core: org.deeplearning4j.* -> org.deeplearning.core.*

Signed-off-by: Alex Black <blacka101@gmail.com>

* deeplearning4j-cuda: org.deeplearning4j.nn.layers.* -> org.deeplearning4j.cuda.*

Signed-off-by: Alex Black <blacka101@gmail.com>

* Import fixes

Signed-off-by: Alex Black <blacka101@gmail.com>

* deeplearning4j-nlp-*: org.deeplearning4.text.* -> org.deeplearning4j.nlp.(language).*

Signed-off-by: Alex Black <blacka101@gmail.com>

* deeplearning4j-ui-model: org.deeplearning4j.ui -> org.deeplearning4j.ui.model

Signed-off-by: Alex Black <blacka101@gmail.com>

* datavec-spark-inference-{server/model/client}: org.datavec.spark.transform -> org.datavec.spark.inference.{server/model/client}

Signed-off-by: Alex Black <blacka101@gmail.com>

* datavec-jdbc: org.datavec.api -> org.datavec.jdbc

Signed-off-by: Alex Black <blacka101@gmail.com>

* Delete org.deeplearning4j.datasets.iterator.impl.MultiDataSetIteratorAdapter in favor of (essentially identical) org.nd4j.linalg.dataset.adapter.MultiDataSetIteratorAdapter

Signed-off-by: Alex Black <blacka101@gmail.com>

* ND4S fixes

Signed-off-by: Alex Black <blacka101@gmail.com>

* Fixes

Signed-off-by: Alex Black <blacka101@gmail.com>

* nd4j-common-tests: org.nd4j.* -> org.nd4j.common.tests

Signed-off-by: Alex Black <blacka101@gmail.com>

* Trigger CI

Signed-off-by: Alex Black <blacka101@gmail.com>

* Fixes

Signed-off-by: Alex Black <blacka101@gmail.com>

* #8878 Ignore CUDA tests on modules with 'nd4j-native under cuda' issue

Signed-off-by: Alex Black <blacka101@gmail.com>

* Fix bad imports in tests

Signed-off-by: Alex Black <blacka101@gmail.com>

* Add ignore on test (already failing) due to #8882

Signed-off-by: Alex Black <blacka101@gmail.com>

* Import fixes

Signed-off-by: Alex Black <blacka101@gmail.com>

* Additional import fixes

Signed-off-by: Alex Black <blacka101@gmail.com>
2020-04-29 11:19:26 +10:00
Alex Black dad6bc5ed2 Merge remote-tracking branch 'eclipse/master' 2020-04-28 20:34:53 +10:00
Benjamin Possolo bc02d9f0b0 fix: TfidfVectorizer.vectorize() NPE when fitted from LabelAwareIterator
issue #8886

Signed-off-by: Benjamin Possolo <bpossolo@gmail.com>
2020-04-27 09:10:57 -07:00
Alex Black dbebaa9c51
Exclude spring framework test dependency from deeplearning4j-nlp-uima (#417)
Signed-off-by: Alex Black <blacka101@gmail.com>
2020-04-27 16:12:01 +10:00
Alex Black 75cc6e2ed7
Increase default timeouts [WIP] (#407)
* Increase default test timeout to 60 sec due to slow PPC CI machines

Signed-off-by: Alex Black <blacka101@gmail.com>

* Fix flaky NLP test (randomly fails due to no RNG seed set)

Signed-off-by: Alex Black <blacka101@gmail.com>
2020-04-23 10:46:42 +10:00
Alexander Stoyakin ccb216a3ed
Fixing issues from Sonar report (#391)
* Fixing issues from Sonar report

* Proper logger of exceptions

* Coding style fixes

* Use dup parameter

* Cleanup, minor issues

* Cuda compilation fixed and some minor fixes
2020-04-23 08:36:49 +10:00
Alexander Stoyakin 455a5d112d
Fixes for codegen generated classes and build improvements (#367)
* Input format extended

* Deleted redundant code

* Added weights format to conv2d config

* Refactoring

* dl4j base test functionality

* Different tests base class per module

* Check base class for dl4j-graph subproject tests

* Check if test classes extend BaseDL4JTest

* Use nd4j-common-tests as transient dependency

* Enums and tests added

* Added codegenerated methods

* Use namespace methods

* Replace DifferentialFunctionFactory  with codegenerated classes

* Fixed linspace

* Namespaces regenerated

* Namespaces used instead of factory

* Regenerated base classes

* Input format extended

* Added weights format to conv2d config

* Refactoring

* dl4j base test functionality

* Different tests base class per module

* Check base class for dl4j-graph subproject tests

* Check if test classes extend BaseDL4JTest

* Use nd4j-common-tests as transient dependency

* Enums and tests added

* Added codegenerated methods

* Use namespace methods

* Replace DifferentialFunctionFactory  with codegenerated classes

* Fixed linspace

* Namespaces regenerated

* Regenerated base classes

* Regenerated namespaces

* Generate nd4j namespaces

* INDArrays accepting constructors

* Generated some ops

* Some fixes

* SameDiff ops regenerated

* Regenerated nd4j ops

* externalErrors moved

* Compilation fixes

* SquaredDifference - strict number of args

* Deprecated code cleanup. Proper base class for tests.

* Extend test classes with BaseND4JTest

* Extend test classes with BaseDL4JTest

* Legacy code

* DL4J cleanup

* Exclude test utils from base class check

* Tests fixed

* Arbiter tests fix

* Test dependency scope fix + pom.xml formatting

Signed-off-by: Alex Black <blacka101@gmail.com>

* Significant number of fixes

Signed-off-by: Alex Black <blacka101@gmail.com>

* Another round of fixes

Signed-off-by: Alex Black <blacka101@gmail.com>

* Another round of fixes

Signed-off-by: Alex Black <blacka101@gmail.com>

* Few additional fixes

Signed-off-by: Alex Black <blacka101@gmail.com>

* DataVec missing test scope dependencies

Signed-off-by: Alex Black <blacka101@gmail.com>

Co-authored-by: Alex Black <blacka101@gmail.com>
2020-04-20 10:27:13 +10:00
Alex Black 63c9223bc2
Assorted fixes (#318)
* #8777 MultiLayerNetwork.evaluate(MultiDataSetIterator) overload

Signed-off-by: Alex Black <blacka101@gmail.com>

* #8768 SameDiff.equals

Signed-off-by: Alex Black <blacka101@gmail.com>

* #8750 shade freemarker library and switch to it in DL4J UI

Signed-off-by: Alex Black <blacka101@gmail.com>

* #8704 DL4J UI redirect

Signed-off-by: Alex Black <blacka101@gmail.com>

* #8776 RecordReaderDataSetIterator builder collectMetaData fix

Signed-off-by: Alex Black <blacka101@gmail.com>

* #8718 Fix DL4J doEvaluation metadata

Signed-off-by: Alex Black <blacka101@gmail.com>

* #8715 ArchiveUtils - Add option to not log every extracted file

Signed-off-by: Alex Black <blacka101@gmail.com>

* No exception for evaluations that don't support metadata

Signed-off-by: Alex Black <blacka101@gmail.com>

* Fixes

Signed-off-by: Alex Black <blacka101@gmail.com>

* #8765 CompGraph+MDS fix for SharedTrainingMaster

Signed-off-by: Alex Black <blacka101@gmail.com>

* small fix

Signed-off-by: Alex Black <blacka101@gmail.com>

* Timeout

Signed-off-by: Alex Black <blacka101@gmail.com>

* Ignore

Signed-off-by: Alex Black <blacka101@gmail.com>

* Revert freemarker shading

Signed-off-by: Alex Black <blacka101@gmail.com>

* Ignore

Signed-off-by: Alex Black <blacka101@gmail.com>
2020-03-27 00:33:13 +11:00
Alexander Stoyakin 353f901c7c
[WIP] Handle missing functionality for binary models (#269)
* Handle missing functionality for binary models

* Exception text fixed
2020-02-27 12:00:15 +11:00
Eduardo Gonzalez ebeeb8bc48 Fix BERT word piece tokenizer stack overflow error (#205)
* Change the regular expression for the Bert tokenizer.

The previous regular expression causes StackOverflowErrors
if given a document with a large amount of whitespace. I
believe that the one I've provided is an equivalent.

* Add test for new BertWordPieceTokenizer RegEx.

This test should cause a StackOverflowError with the previous version.

* Fix assert off by one.
2020-02-10 14:33:04 +11:00
Alex Black ce6848c9fe
Test fixes (#218)
* Test speedups / integration test run only for CUDA - NLP

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* nlp-uima CUDA slow tests

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Spark CUDA timeout fixes

Signed-off-by: AlexDBlack <blacka101@gmail.com>
2020-02-07 16:25:02 +11:00
Alex Black a25bb6a11c
Unit/integration test split + test speedup (#166)
* Add maven profile + base tests methods for integration tests

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Switch from system property to environment variable; seems more reliable in intellij

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Add nd4j-common-tests module, and common base test; cleanup

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Ensure all ND4J tests extend BaseND4JTest

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Test spam reduction, import fix

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Add test logging to nd4j-aeron

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Fix unintended change

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Reduce sprint test log spam

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* More test spam cleanup

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Significantly speed up TSNE tests

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* W2V iterator test unit/integration split

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* More NLP test speedups

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Avoid debug/verbose mode leaking between tests

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* test tweak

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Arbiter extends base DL4J test

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Arbiter test speedup

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* nlp-uima test speedup

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* More test speedups

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Fix ND4J base test

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Few small ND4J test speed improvements

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* DL4J tests speedup

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* More tweaks

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Even more test speedups

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* More tweaks

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Various test fixes

Signed-off-by: Alex Black <blacka101@gmail.com>

* More test fixes

Signed-off-by: Alex Black <blacka101@gmail.com>

* Add ability to specify number of threads for C++ ops in BaseDL4JTest and BaseND4JTest

Signed-off-by: Alex Black <blacka101@gmail.com>

* nd4j-aeron test profile fix for CUDA

Signed-off-by: Alex Black <blacka101@gmail.com>
2020-01-22 22:27:01 +11:00
Alex Black 29104083cc
Various fixes (#143)
* #8568 ArrayUtil optimization

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* #6171 Keras ReLU and ELU support

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Keras softmax layer import

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* #8549 Webjars dependency management

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Fix for TF import names ':0' suffix issue / NPE

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* BiasAdd: fix default data format for TF import

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Update zoo test ignores

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* #8509 SameDiff Listener API - provide frame + iteration

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* #8520 ND4J Environment

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Deconv3d

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Deconv3d fixes + gradient check

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Conv3d fixes + deconv3d DType test

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Fix issue with deconv3d gradinet check weight init

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* #8579 Fix BaseCudaDataBuffer constructor fix for UINT16

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* DataType.isNumerical() returns false for BOOL type

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* #8504 Reduce Spark log spam for tests

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Clean up DL4J gradient check test spam

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* More Gradient check spam reduction

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* SameDiff test spam reduction

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Fixes for FlatBuffers mapping

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* SameDiff log spam cleanup

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Tests should extend BaseNd4jTest

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Remove debug line in c++ op

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* ND4J test spam cleanup

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* DL4J test spam reduction

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* More Dl4J and datavec test spam cleanup

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Fix for bad conv3d test

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Additional test

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Embedding layers: don't inherit global default activation function

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Trigger CI

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Consolidate all BaseDL4JTest classes to single class used everywhere; make timeout configurable per class

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Test fixes and timeout increases

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Timeouts and PReLU fixes

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Restore libnd4j build threads arg for CUDA build

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Increase timeouts on a few tests to avoid spurious failures on some CI machines

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* More timeout fixes

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* More test timeout fixes

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Tweak timeout for one more test

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Final tweaks

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* One more ignore

Signed-off-by: AlexDBlack <blacka101@gmail.com>
2020-01-04 13:45:07 +11:00
Alexander Stoyakin f5068f3980 Added missing Java ops wrappers (#122)
* Timeouts added

* Added some ops

* Ops added

* Fixed tests

* Minor fix

* Some fixes

* Digamma added

* Small fixes

* Timeouts added

* Added some ops

* Ops added

* Fixed tests

* Minor fix

* Some fixes

* Digamma added

* Small fixes

* Fused batch norm fixes-

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Tests switched off.

* Added test for resize_bicubic.

* Eliminated wasted in test of bicubic resize.

* Switched off multithreading explicit.

* HsvToRgb and RgbToHsv added

* Eliminated waste comments and conform proper float constants.

Signed-off-by: shugeo <sgazeos@gmail.com>

* Fixed multithreading with resize_bicubic helper for cpu platform.

Signed-off-by: shugeo <sgazeos@gmail.com>

* ResizeBicubic was fixed.

* Some fixes

* Fix op name

* Validation fixed.

* Clarifications for tests

* Wrappers and small fixes for new ops.
2019-12-19 20:15:48 +11:00
raver119 972fae60dc
Update master (#8511)
* cleaned up bert iterator tests (#110)

Signed-off-by: eraly <susan.eraly@gmail.com>

* Various pre-release fixes (#111)

* Various fixes

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Fix default dtypes for MaxPoolWithArgmax

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Small pre-release tweak (#112)

* Log UI address on launch as in previous Play-based UI

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Logging level tweak for UI

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* http not https

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* datavec python ensure host (#113)

* ensure host

* one more host ensure

* info->debug

* [WIP] reverse improvements (#115)

* initial commit

Signed-off-by: raver119 <raver119@gmail.com>

* reverse draft

Signed-off-by: raver119 <raver119@gmail.com>

* reverse kernel

Signed-off-by: raver119 <raver119@gmail.com>

* reverse kernel

Signed-off-by: raver119 <raver119@gmail.com>

* 2 micro fixes

Signed-off-by: raver119 <raver119@gmail.com>

* Shugeo resize fix5 (#102)

* Refactored resize images ops to use TF-like bool args as input.

* Refactored helpers for cpu implementation of resize_bilinear and resize_nearest_neighbor ops.

* Refactored cuda implementation for image.resize_bilinear and image.resize_nearest_neighbor ops helpers.

* Refactored nearest_neighbor resize op.

* Added a pair of tests for special case of resize_bilinear algorithm.

* Fixed issue with resize_bilinear op.

* Refactored cpu implementation for helpers with resize_nearest_neighbor op.

* Final fixed for resize ops to conform TF v.1.5

* Refactored cuda helpers for resize_neares_neighbor op.

* Fixed resize_bilinear to accept proper data.

* Fixed issue with non-float input for resize_bilinear op.

* Refactored cuda helper for resize_bilinear to proper process non-float inputs.

* Added tests for resize_bilinear to int inputs.

* Fixed ResizeBilinear wrapper

* Tests fixed

* Fixed float and bool constant to avoid overflow for some kind of compilers.

* Corrected float constants with float data type.

* Added f suffix for float constants.

* Corrected float constant to avoid overflow with initializing lists.

* Corrected float initializing list with float input.

* Corrected bool constant with initalizing list.

* Corrected float and bool values with initializing lists.

* Fixed wrong constant.

* Fixed issue with 1x1 input picture for resize.

* ResizeBilinear default values on import fix

Signed-off-by: raver119 <raver119@gmail.com>
2019-12-06 11:10:44 +03:00
Alex Black 91de96588c
BertIterator sentence pair support for supervised training (#108)
* bert iterator sentence pair handling

Signed-off-by: eraly <susan.eraly@gmail.com>

* bert iterator sentence pair handling -seg

Signed-off-by: eraly <susan.eraly@gmail.com>

* bert iterator sentence pair handling tests

Signed-off-by: eraly <susan.eraly@gmail.com>

* test with pairs long done

Signed-off-by: eraly <susan.eraly@gmail.com>

* more tests with bert iter sent pairs done

Signed-off-by: eraly <susan.eraly@gmail.com>

* fixed copyright, formatting

Signed-off-by: eraly <susan.eraly@gmail.com>

* bert iterator - added featurizer for sentence pair inference

Signed-off-by: eraly <susan.eraly@gmail.com>

* bert iterator - finished tests

Signed-off-by: eraly <susan.eraly@gmail.com>

* bert iterator - finished tests, polish

Signed-off-by: eraly <susan.eraly@gmail.com>

* collection labeled sentence provider

Signed-off-by: eraly <susan.eraly@gmail.com>

* lombok fix for pojo class

Signed-off-by: eraly <susan.eraly@gmail.com>

* java doc misc clean up

Signed-off-by: eraly <susan.eraly@gmail.com>

* Private access modifiers

Signed-off-by: AlexDBlack <blacka101@gmail.com>
2019-12-04 23:35:38 +11:00
Samuel Audet 5e07998e59 Add support for CUDA 10.2 (#89) 2019-11-29 16:31:03 +11:00
Alex Black 6f514e9431
DL4J UI: Migrate from Play to Vertx (#68)
* Vertx transition initial steps

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Assets serving works

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Next steps

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Add other pages

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* Add remaining modules

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Delete deeplearning4j-play module

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* SD UI module

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Main UI works

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Multi-session UI fixed

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* TSNE fixed

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Polish, fixes, re-add CLI launch option

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Fix remote UI functionality

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Final tweaks

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Remove Scala version suffix from deeplearning4j-ui

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Update Arbiter UI to vertx

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Missing version tag

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Remove (now unneeded) scala from arbiter UI

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Move vertx version to parent pom

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Switch template loading from classpath to a more reliable mechanism

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Small fix for I18N message loading

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Switch to shaded jackson for UI module JSON conversion

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Small test tweaks and copyright header fix

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* pom file copyright headers

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* plugins -> pliginManagement for java 8 modules

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* plugins -> pliginManagement for java 8 modules

Signed-off-by: AlexDBlack <blacka101@gmail.com>
2019-11-22 23:50:34 +11:00
Susan Eraly 823bd0ff88 Fixes #8415, BERT iterator inference (#71)
* Convenience method for inference with BERT iterator

Signed-off-by: eraly <susan.eraly@gmail.com>

* Included preprocessing

Signed-off-by: eraly <susan.eraly@gmail.com>

* Copyright + example

Signed-off-by: eraly <susan.eraly@gmail.com>
2019-11-22 13:19:28 +11:00
Alex Black 47d19908f4
Various fixes (#43)
* #8172 Enable DL4J MKLDNN batch norm backward pass

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* #8382 INDArray.toString() rank 1 brackets / ambiguity fix

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* #8308 Fix handful of broken links (inc. some in errors)

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Unused dependencies, round 1

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Unused dependencies, round 2

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Unused dependencies, round 3

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Small fix

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Uniform distribution TF import fix

Signed-off-by: AlexDBlack <blacka101@gmail.com>
2019-11-14 19:38:20 +11:00
AlexDBlack 2844f8b69a Merge remote-tracking branch 'konduit/master' 2019-11-02 19:00:47 +11:00
Alexander Stoyakin 45a40c8a89
DL4J/ND4J: Do pass on integer casts (#15)
* Int cast fixes.

* Revert "Int cast fixes."

This reverts commit aa36e8ca

* Int casts

* Int cast

* Int casts

* Get rid of int casts. Dropping deprecated aggregate ops.

* java scatterUpdate changes

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* c++ scatterUpdate changes

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* Remove aggregated ops.

* Restored test

* Tests restored.

* Minor fixes
2019-10-31 11:23:09 +02:00
Alex Black 7f06df5826
Small URL fix (#8297)
Signed-off-by: AlexDBlack <blacka101@gmail.com>
2019-10-18 11:25:58 +11:00
Alexander Stoyakin c4307384f3 Fixed shape for muli 2019-10-16 12:59:25 +03:00
raver119 7abc574eeb
Snapshot update (#8194)
* fix double consumption of rng on cpu

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* Shyrma docs (#222)

* - documenting and profiling matrix_set_diag cuda kernel

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* - correct formula of pnorm pooling in cuda 2d/3d kernels
- remove helper matrix_diag which duplicates work of helper matrix_set_diag

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* cublasHandle sharing + lock

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* cublasHandle sharing + lock

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* Documentation from serialization/deserialization in NLP (#221)

* refactoring

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* Javadocs

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* Javadoc fixed

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* Cleanup

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* dedicated lock for getCudaCublasHandle

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* Small fixes (#223)

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* ELU DL4J fixes (#224)

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* javadoc (#225)

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* Small test compilation fix (#226)

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* #8182 remove spark version suffix (#227)

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* [WIP] Thread safety (#229)

* sync after cublas*gemm

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* mutex for CublasHelper

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* don't store cublasHandle in LaunchContext, it's per-device anyway

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* some printout

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* check for field instead

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* pew-pew

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* don't release ContextBuffers until device changed

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* small tweak

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* some logging in sgemm

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* stream sync

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* some more logging

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* some more error checks

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* one fancy test

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* one fancy test

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* minor AffinityManager fix

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* cudaEvent error logging improvement

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* ConstantHelper thread safety

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* - minor corrections in ConstantTadHelper

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* ConstantShapeHelper thread safety

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* ConstantTadHelper.cu updated

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* logging off

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* logging off

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2019-09-03 22:02:02 +03:00
raver119 1003428a18
[WIP] Int broadcastables (#195)
* Removed invalid resource and fixed tests

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* legacy scalar/pairwise/broadcast int ops

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* NDArray int broadcastables

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* few more bitwise tests

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* java side update

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* Argument type changed for shift ops

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* legacy scalar/pairwise/broadcast int ops

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* NDArray int broadcastables

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* few more bitwise tests

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* java side update

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* Argument type changed for shift ops

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2019-08-30 10:12:40 +03:00
Alex Black dcc2baa676
Version upgrades (#199)
* DataVec fixes for Jackson version upgrade

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* DL4J jackson updates + databind version 2.9.9.3

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* Shade snakeyaml along with jackson

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* Version fix

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* Switch DataVec legacy JSON format handling to mixins

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* Next set of fixes

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* Cleanup for legacy JSON mapping

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* Upgrade commons compress to 1.18; small test fix

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* New Jackson backward compatibility for DL4J - Round 1

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* New Jackson backward compatibility for DL4J - Round 2

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* More fixes, all but legacy custom passing

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* Provide an upgrade path for custom layers for models in pre-1.0.0-beta JSON format

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* Legacy deserialization cleanup

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* Small amount of polish - legacy JSON

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* Upgrade guava version

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* IEvaluation legacy format deserialization fix

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* Upgrade play version to 2.7.3

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* Update nd4j-parameter-server-status to new Play API

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* Update DL4J UI for new play version

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* More play framework updates

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* Small fixes

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* Remove Spark 1/2 adapter code from DataVec

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* datavec-spark dependency cleanup

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* DL4J spark updates, pt 1

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* DL4J spark updates, pt 2

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* DL4J spark updates, pt 3

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* DL4J spark updates, pt 4

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* Test fix

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* Another fix

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* Breeze upgrade, dependency cleanup

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* Add Scala 2.12 version to pom.xml

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* change-scala-versions.sh - add scala 2.12, remove 2.10

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* Move Spark version properties to parent pom (now that only one spark version is supported)

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* DataVec Play fixes

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* datavec play dependency fixes

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* Clean up old spark/jackson stuff

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* Cleanup jackson unused dependencies

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* Dropping redundant dependency

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* Removed scalaxy dependency

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* DataVec fixes for Jackson version upgrade

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* DL4J jackson updates + databind version 2.9.9.3

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* Shade snakeyaml along with jackson

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* Version fix

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* Switch DataVec legacy JSON format handling to mixins

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* Next set of fixes

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* Cleanup for legacy JSON mapping

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* Upgrade commons compress to 1.18; small test fix

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* New Jackson backward compatibility for DL4J - Round 1

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* New Jackson backward compatibility for DL4J - Round 2

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* More fixes, all but legacy custom passing

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* Provide an upgrade path for custom layers for models in pre-1.0.0-beta JSON format

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* Legacy deserialization cleanup

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* Small amount of polish - legacy JSON

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* Upgrade guava version

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* IEvaluation legacy format deserialization fix

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* Upgrade play version to 2.7.3

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* Update nd4j-parameter-server-status to new Play API

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* Update DL4J UI for new play version

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* More play framework updates

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* Small fixes

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* Remove Spark 1/2 adapter code from DataVec

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* datavec-spark dependency cleanup

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* DL4J spark updates, pt 1

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* DL4J spark updates, pt 2

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* DL4J spark updates, pt 3

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* DL4J spark updates, pt 4

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* Test fix

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* Another fix

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* Breeze upgrade, dependency cleanup

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* Add Scala 2.12 version to pom.xml

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* change-scala-versions.sh - add scala 2.12, remove 2.10

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* Move Spark version properties to parent pom (now that only one spark version is supported)

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* DataVec Play fixes

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* datavec play dependency fixes

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* Clean up old spark/jackson stuff

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* Cleanup jackson unused dependencies

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* Add shaded guava

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* Dropping redundant dependency

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* Removed scalaxy dependency

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* Ensure not possible to import pre-shaded classes, and remove direct guava dependencies in favor of shaded

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* ND4J Shaded guava import fixes

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* DataVec and DL4J guava shading

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* Arbiter, RL4J fixes

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* Build fixed

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* Fix dependency

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* Fix bad merge

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* Jackson shading fixes

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* Set play secret, datavec-spark-inference-server

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* Fix for datavec-spark-inference-server

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* Arbiter fixes

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* Arbiter fixes

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* Small test fix

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2019-08-30 14:35:27 +10:00
Alexander Stoyakin 650539528c [WIP] Updating failed tests to reflect code changes (#184)
* Test updated to reflect changes in random generation

* Invalid resource removed and fixed tests

Signed-off-by: Alexander Stoyakin <alexander.stoyakin@gmail.com>
2019-08-27 19:56:04 +03:00
Alex Black 80d35377d4
SameDiff cleanup and fixes (#150)
* Cleanup

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* SDVariable no longer extends DifferentialFunction

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* #8123 Remove cloning library to avoid 'illegal reflective access' warnings

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* #8095 Make Pooling3D abstract, fix flatbuffers serialization issue

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* #8117 WordVectorSerializer deprecated method javadoc

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* Small fixes

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* Final fixes

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* One more

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2019-08-23 15:09:53 +10:00
Alex Black 348d9c59f7
Various fixes (#141)
* #8121 CnnSentenceDataSetIterator fixes

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* #8120 CnnSentenceDataSetIterator.loadSingleSentence no words UX/exception improvement

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* #8122 AggregatingSentenceIterator builder - addSentencePreProcessor -> sentencePreProcessor

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* #8082 Arbiter - fix GridSearchCandidateGenerator search size issue

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2019-08-21 23:47:24 +10:00
raver119 ec847e034b
[WIP] Remote inference (#96)
* fix pad javadoc and @see links. (#72)

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* [WIP] More fixes (#73)

* special tests for ConstantTadHelper/ConstantShapeHelper

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* release methods for data buffers

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* delete temporary buffer Java side

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* delete temporary buffer Java side

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* delete temporary TadPack C++/Java side (#74)

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* Zoo model TF import test updates (#75)

* argLine fix, update compression_gru comment

* updated comment for xception

* undid but commented argLine change

* updated xlnet comment

* copyright headers

* - new NDArray methods like()/ulike() (#77)

- fix for depthwise_conv2d_bp + special test

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* upsampling2d fix CUDA

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* DL4J trace logging (#79)

* MLN/CG trace logging for debugging

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* Tiny tweak

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* strided_slice_bp shape fn leak fix

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* SameDiff fixes and naming (#78)

* remove SDVariable inplace methods

* import methods

* npe fix in OpVal

* removed SameDiff inplace ops from tests

* Naming updates, moved to centralized methods in SameDiff, should use op_#:# for everything

* quick fixes

* javadoc

* SDVariable eval with placeholders

* use regex match

* better matching

* fix javadoc. (#76)

* fix javadoc.

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* replace most @see with @link s.

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* 4 additional tests

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* Various DL4J/ND4J fixes (#81)

* #7954 Force refresh of UI when switching tabs on overview page

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* #8017 Concurrent modification exception (synchronize) fix

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* #8033 Don't initialize updater in middle of writing memory crash dump

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* #8208 Fix shape checks for ND4J int[] creator methods

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* #6385 #7992 Keras import naming fixes + cleanup

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* #8016 Upsampling3D - add NDHWC format support

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* Refactor NativeOps.h to export C functions

* Actually export functions from NativeOps.h

* Adapt the Java wrappers in ND4J generated with JavaCPP

* Create C wrappers for some of the C++ classes currently used by ND4J

* remove duplicate code in createBufferDetached. (#83)

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* Keras model import - updater lr fix (#84)

* Keras model import - updater lr fix

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* Keras model import - updater lr fix, cleanup

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* Fix functions of OpaqueVariablesSet

* SameDiff Convolution Config validation, better output methods (#82)

* Conv Config validation & tests

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* stackOutputs utility method

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* use constructor for validation, support negative kernel sizes (infered from weights)

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* better output methods

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* move output to be with fit and evaluate

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* fixes

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* more fixes

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* refactor duplicate code from pad methods. (#86)

* refactor duplicate code from pad methods.

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* replace switch with if.

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* Various ND4J/DL4J fixes and improvements (#87)

* Reshape and reallocate - small fixes

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* Reshape and reallocate - small fixes

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* #6488 ElementWiseVertex broadcast support

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* Constructors and broadcast supported it Transforms.max/min

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* #8054 ElementWiseVertex now supports broadcast inputs

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* #8057 Nd4j.create overload dtype fix

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* #7551 ND4J Shape validation fix

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* [WIP] Numpy boolean import (#91)

* numpy bool type

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* numpy bool java side

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* remove create method with unused parameter. (#89)

* remove create method with unused parameter.

* removed more unused methods.

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* removing more unused code.

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* last removal of unused code.

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* remove createSparse methods. (#92)

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* Various ND4J/DL4J fixes (#90)

* Deprecate Old*Op instances

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* #8063 #8054 Broadcast exceptions + cleanup inplace ops

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* Small fix

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* Remove bad test condition

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* #7993 Fix shape function issue in crop_and_resize op

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* DL4J SameDiff lambda layer fix

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* #8029 Fix for pnorm backprop math

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* #8038 Fix Op profiler NaN/Inf triggering + add tests (#93)

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* createUninitializedDetached refactoring. (#94)

* wip

* update interface, add null implementations.

* Breaking one test in a weird way.

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* createUninitializedDetached refactored.

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* cuda build fix for issues introduced by recent refactoring

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* initial commit

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* deps tweaks

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* initial prototype

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* modules reorganized

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* gprc module moved to nd4j-remote as well

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* gprc module moved to nd4j-remote as well

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* serving prototype

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* serving prototype

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* serving prototype

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* serving prototype

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* [WIP] More of CUDA (#95)

* initial commit

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* Implementation of hashcode cuda helper. Working edition.

* Fixed parallel test input arangements.

* Fixed tests for hashcode op.

* Fixed shape calculation for image:crop_and_resize op and test.

* NativeOps tests. Initial test suite.

* Added tests for indexReduce methods.

* Added test on execBroadcast with NDArray as dimensions.

* Added test on execBroadcastBool with NDArray as dimensions.

* Added tests on execPairwiseTransform and execPairwiseTransofrmBool.

* Added tests for execReduce with scalar results.

* Added reduce tests for non-empty dims array.

* Added tests for reduce3.

* Added tests for execScalar.

* Added tests for execSummaryStats.

* - provide cpu/cuda code for batch_to_space
- testing it

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* - remove old test for batch_to_space (had wrong format and numbers were not checked)

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* Fixed complilation errors with test.

* Added test for execTransformFloat.

* Added test for execTransformSame.

* Added test for execTransformBool.

* Added test for execTransformStrict.

* Added tests for execScalar/execScalarBool with TADs.

* Added test for flatten.

* - provide cpu/cuda code for space_to_Batch operaion

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* Added test for concat.

* comment unnecessary stuff in s_t_b

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* Added test for specialConcat.

* Added tests for memcpy/set routines.

* Fixed pullRow cuda test.

* Added pullRow test.

* Added average test.

* - correct typo in NDArray::applyPairwiseTransform(nd4j::pairwise::BoolOps op...)

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* - debugging and fixing cuda tests in JavaInteropTests file

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* - correct some tests

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* Added test for shuffle.

* Fixed ops declarations.

* Restored omp and added shuffle test.

* Added convertTypes test.

* Added tests for execRandom. Eliminated usage of RandomBuffer with NativeOps.

* Added sort tests.

* Added tests for execCustomOp.

* - further debuging and fixing tests terminated with crash

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* Added tests for calculateOutputShapes.

* Addded Benchmarks test.

* Commented benchmark tests.

* change assertion

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* Added tests for apply_sgd op. Added cpu helper for that op.

* Implement cuda helper for aplly_sgd op. Fixed tests for NativeOps.

* Added test for assign broadcastable.

* Added tests for assign_bp op.

* Added tests for axpy op.

* - assign/execScalar/execTransformAny signature change
- minor test fix

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* Fixed axpy op.

* meh

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* - fix tests for nativeOps::concat

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* sequential transform/scalar

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* allow nested parallelism

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* assign_bp leak fix

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* block setRNG fix

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* enable parallelism by default

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* enable nested parallelism by default

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* Added cuda implementation for row_count helper.

* Added implementation for tnse gains op helper.

* - take into account possible situations when input arrays are empty in reduce_ cuda stuff

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* Implemented tsne/edge_forces op cuda-based helper. Parallelized cpu-based helper for edge_forces.

* Added kernel for tsne/symmetrized op heleper.

* Implementation of tsne/symmetrized op cuda helper. Working edition.

* Eliminated waste printfs.

* Added test for broadcastgradientargs op.

* host-only fallback for empty reduce float

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* - some tests fixes

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* - correct the rest of reduce_ stuff

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* - further correction of reduce_ stuff

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* Added test for Cbow op. Also added cuda implementation for cbow helpers.

* - improve code of stack operation for scalar case

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* - provide cuda kernel for gatherND operation

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* Implementation of cbow helpers with cuda kernels.

* minor tests tweaks

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* minor tests tweaks

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* - further correction of cuda stuff

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* Implementatation of cbow op helper with cuda kernels. Working edition.

* Skip random testing for cudablas case.

* lstmBlockCell context fix

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* Added tests for ELU and ELU_BP ops.

* Added tests for eq_scalar, gt_scalar, gte_scalar and lte_scalar ops.

* Added tests for neq_scalar.

* Added test for noop.

* - further work on clipbynorm_bp

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* - get rid of concat op call, use instead direct concat helper call

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* lstmBlockCell context fix

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* Added tests for lrelu and lrelu_bp.

* Added tests for selu and selu_bp.

* Fixed lrelu derivative helpers.

* - some corrections in lstm

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* operator * result shape fix

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* - correct typo in lstmCell

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* few tests fixed

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* CUDA inverse broadcast bool fix

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* disable MMAP test for CUDA

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* BooleanOp syncToDevice

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* meh

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* additional data types for im2col/col2im

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* Added test for firas_sparse op.

* one more RandomBuffer test excluded

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* Added tests for flatten op.

* Added test for Floor op.

* bunch of tests fixed

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* mmulDot tests fixed

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* more tests fixed

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* Implemented floordiv_bp op and tests.

* Fixed scalar case with cuda implementation for bds.

* - work on cuda kernel for clip_by_norm backprop op is completed

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* Eliminate cbow crach.

* more tests fixed

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* more tests fixed

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* Eliminated abortion with batched nlp test.

* more tests fixed

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* Fixed shared flag initializing.

* disabled bunch of cpu workspaces tests

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* scalar operators fix: missing registerSpecialUse call

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* Fixed logdet for cuda and tests.

* - correct clipBynorm_bp

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* Fixed crop_and_resize shape datatype.

* - correct some mmul tests

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* build fix

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* exclude two methods for JNI

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* exclude two methods for JNI

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* exclude two methods for JNI (#97)

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* temporary stack fix

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* downgrade jetty to latest stable version

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* test and profiles

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* Servlet skeleton

* one test case

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* one test case

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* compilation fix

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* draft improvements

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* draft improvements

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* proof of concept works

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* proof of concept works

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* Servlet

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* logging + simple timing

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* Content type fixed

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* Profile required

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* Servlet tests

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* Post test

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* Tests added:

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* Minor tweaks

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* Constants used

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* Check content type

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* Some tests

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* Errors checking

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* Constraints and tests

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* Minor tweaks

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* Dl4j servlet skeleton

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* Moving class to dl4j

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* Builder extended

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* initial dl4j commit

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* unirest version change

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* temp fallback

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* Reverted unirest version

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* Reverted unirest version

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* revert back unirest version change

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* revert unirest change

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* some additional checks in builder

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* few more fields

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* Test added

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* lombok

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* Tests added

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* deps

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* profiles re-introduced

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* Added tests

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* Model servlet

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* builders

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* builders

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* Servlet skeleton

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* Servlet tests

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* builders

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* get rid of old class

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* use PI for inference

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* superbuilder

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* get back builder

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* Servlet builder

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* PI setup

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* get rid of superbuilder

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* SameDiffServlet inheritance constructor

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* dl4jservlet attached to samediffservlet

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* builder types fix

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* dummy model

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* single out

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* loss

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* Tests added

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* missed builder type

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* working serving example

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* sd model fix

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* fix unirest version

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* More tests

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* Tests added:

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* Minor tests fixes

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* Tests fixed

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* Build fixed

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* Test added

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* Tests fixed

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* Ser/deser added

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* one more unirest fix

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* Custom serializers

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* Tests disabled

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* revert back unirest version change

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* update

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* some default fields values

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* some comments/javadoc

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* - move serde impls to client module
- get rid of INDArray serde for now

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* jackson-based serde for float[], double[] and String

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* more of basic ser/de + tests

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* minor api changes

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* change imports/signatures

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* Optional parralel inference

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* Insert pause between tests as workaround for unavailable port issue

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* few unused imports removed

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* Models usage

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* Models usage

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* - InputAdapter + OutputAdapter = InferenceAdapter
- JsonModelServer now allows separate configuration of InputAdapter and OutputAdapter

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* unused import

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* input adapter..

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* minor signature change

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* few more signatures updated

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* input/output adapter

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* Tests added

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* javadocs added

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* Test fixed

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* minor polishing

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* more of javadoc

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* signature change

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2019-08-14 12:11:09 +03:00
Alex Black 79d1f02ee1 DL4J BERT iterator: Add option to prepend token (#39)
* Add option to prepend token

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* Javadoc

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2019-07-20 22:17:08 +10:00
Alex Black c28372cb49 BERT tokenization fixes (#35)
* Add composite token preprocessor

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* Fix case issue with bert tokenization

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2019-07-20 22:00:40 +10:00
Alex Black 1170827c18 Merge master to upstream (#7945)
* Shugeo strided slice zeros (#14)

* Modified strided_slice op to properly work with empty-like shapes.

* Fixed test for reduce_mean with empty-like input.

* [WIP] Last merge (#15)

* correct logsoftmax looss (#2)

* Small SameDiff listener fix (#4)

* Various fixes (#6)

* #7839 Fix for asXMatrix and tests

* #7866 EmbeddingSequenceLayer dtype fix + test

* #7856 SameDiff save/load stream methods

* #7859 RegressionEvaluation rank 4 fix + tests + axis configuration

* EvaluationBinary 3d/4d

* More evaluation 3d/4d tests

* #7847 Evaluation empty checks

* Small test ifx

* #7848 Fix median edge case

* Improve DL4J samediff layer tests

* [WIP] FastText wrapper implemented (#8)

* FastText implemented

* Some fixes

* Fix shapes for wordsNearest

* Validation of input vectors

* Fixes

* Fixed test

* Thread tagged

* Some tweaks

* setContextClassLoader for DeallocatorServiceThread

* Numpy format tests (#1)

* Various fixes (#11)

* #7852 SameDiff gather fix

* #7892 SameDiff placeholder to constant conversion

* #7890 validate input rank for MLN/CG init methods

* Fix broken permute shape calculation

* Permute and gather fixes

* Tests

* #7850 LogSumExp fix + test

* Handful of test fixes

* Empty arrays with non-scalar shapes (#10)

* minor rearrangements for lambdas

* empty tensors with non-scalar shapes

* numpy empty tensors with non-scalar shapes

* few more empty tweaks

* Small fixes

* conv3d signature update

* micro fix in batchnorm mkldnn

* Import fixes

* Fix

* MKL-DNN update

* Small fill fix

* fill with empty input + test

* Fixes

* Small error improvement

* Fix

* one special test

* couple of fixes for lstm

* Rewrite TFGraphMapper.getNDArrayFromTensor to be maintainable and less error prone

* Fixes

* FP16

* Unsigned

* BFloat16

* Fill op - empty tweaks

* - couple of fixes for empty arrays construction
- stack updated

* strided slice fix

* one transform test

* provide method for reducing shapeInfo in case of input array is empty

* Fixed reduceAlongDimensions to use empty input properly.

* couple of broadcast tests

* couple of tests broadcast tests + tweak to make them pass

* add check of non-empty to methods producing sub-arrays

* Fixed reshapeC with zeros in shape.

* complete empty check in reduce_... legacy ops

* Concat and cumsum/prod

* Tweak to empty shape inference on import

* add empty check to the rest of reduce legacy ops

* one more test

* correct typo in evalReduceShapeInfoEmpty

* Added tests for reduce_* ops to tests with zero shapes.

* few more tests for empty reductions

* Fixed strided_slice op with empty case and tests.

* one more empty reduction test

* Fixed strided_slice test.

* add empty check to NDArray::reshapei

* infOrMax

* empty min/max with infinity tests

* made unstack working correctly with empty arrays

* few IndexReduce tests + tweaks for empty shapes

* add test for empty concat

* few tests fixed

* Validation fix for reductions on empty shapes

* Reverse fix

* Reduction shape calc fixes

* SameDiff.generateOutputVariable: don't use shape function to determine number of outputs

* Range fix

* - NDArray constructor updated for scalars/empty arrays
- few tests fixed

* More fixes

* Empty creator fixes

* concat fix

* concat fix

* TF import tests: allow 'both all NaN' and 'both all inf' to pass

* Slice, zero fraction, and reshape fixes

* transpose, gather

* Zero fraction

* scalar cast fix

* Empty reduction axis support

* few more tests fixed

* Fixed input checks conforming with TF for concat op and tests.

* few tests fixed

* matmul scalar shape fix

* Fixed checkout for data type and scalarity with concat to allow non-empty scalars with vector concats.

* broadcast bool fix

* few more tests

* few more tests

* correct evalReduceShapeInfoEmpty

* argmax/argmin + tests

* one more empty edge case + one more test

* argmax/argmin/realdiv_bp tweaks

* empty reshape test + fix

* Helper fixes

* Small fixes

* Gather test fix

* Gather test fix

* Small fixes

* reduce scalar zero values

* scalar mean workaround

* Remove debug code

* along dim mean workaround

* one more test

* - equalsTo() tweak for empty arrays
- one more test

* broadcast tweaks

* [WIP] Fixing outstanding issues for NLP (#9)

* Avoid using not-inited objects

* Test fixed.

* Redundant method avoided for models like FastText

* KMeans++ implementation

* KMeans++ implementation

* Disable parallel execution

* KMeans++

* Tests

* Dev branch merge (#16)

* SameDiff: convertDataType and gradient check util improvements (#12)

* GradCheck util improvements

* StopGradient constructor + test

* SameDiff: Add datatype conversion

* Javadoc and add DataType.isNumerical()

* Small fix

* Fix SameDiff TF import test cases intermediate naming (workaround for bad default)

* TFGraphTestAllHelper: check intermediates in execution order

* Add missing debug listener

* [WIP] lstmBlock fix + other changes (#13)

- fixes lstmBlock issue
- changes NDArray method reshape(), permute(), transpose() by making them return instance instead of pointer
- CheckNumerics op
- fixes for ReduceBool IsInfOrNan & IsFinite

* Small test fix

* CheckNumerics op wrapper

* Fix some issues on master (#17)

* Fix DataVec test issue

* Fix issue with dl4j SameDiff output layer

* Dtype fix for lambda layers

* #7912 BertIterator dtype fix (use float32 not global default)

* [WIP] Next set of CUDA stuff (#7)

New CUDA implementations and improvements

* bad file

* Dev branch master merge (#23)

* SameDiff: convertDataType and gradient check util improvements (#12)

* GradCheck util improvements

* StopGradient constructor + test

* SameDiff: Add datatype conversion

* Javadoc and add DataType.isNumerical()

* Small fix

* Fix SameDiff TF import test cases intermediate naming (workaround for bad default)

* TFGraphTestAllHelper: check intermediates in execution order

* Add missing debug listener

* [WIP] lstmBlock fix + other changes (#13)

- fixes lstmBlock issue
- changes NDArray method reshape(), permute(), transpose() by making them return instance instead of pointer
- CheckNumerics op
- fixes for ReduceBool IsInfOrNan & IsFinite

* Small test fix

* CheckNumerics op wrapper

* Compatibility of deserialization (#18)

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* SameDiff: add activation gradient checking support for debugging (#19)

* SameDiff gradient checker: first pass on activation gradient checks

* Fixes + tests for activation gradient checking

* Javadoc

* [WIP] Some nd4j data type corrections (#20)

* Adjust data type

* Set correct Data type.

* Size of proper data type.

* fix averaged cpu load (#22)

* SameDiff ops, TF import and fixes (#24)

* CheckNumerics tests + fixes + misc fixes

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* Fake quant

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* Fixes

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* FakeQuantWithMinMaxArgs

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* CheckNumerics fix

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* Fix libnd4j ALL_INTS and ALL_FLOATS declaration (uint and bfloat types)

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* Small fix

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* Javadoc

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* Exception tweak

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* fix

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Fix for out of scope stack allocated var use

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* Ignores

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Ignore for known failing test (already logged issue)

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Merge upstream to fork (#25)

* Add thousand-separator commas to TotalParams (#7915)

* Add thousand-separator commas to TotalParams

The number of parameters can be quite large, and it would help the reading of the summary printout to have the TotalParams column & values at the bottom have thousand-separator-commas in them.

* Add thousand-separator commas to MultiLayerNetwork

Corresponding change to MultiLayerNetwork

Signed-off-by: Jxtps Jxtps <jxtps435@gmail.com>

* Update contributing and issue/PR templates (#7934)

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Fix link to AdaDelta paper (#7942)

Fix link to AdaDelta paper hosted on matthewzeiler.com

Signed-off-by: Jxtps

* Fixes, and ignores for known/logged failing issues (#7943)

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* SameDiff + DL4J/SameDiff: Multiple fixes (#28)

* #7919 HDF5 attribute buffer length fix

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* #7909 Arbiter constructor exception ux improvements

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* #7925 RNN output layer length checks

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* #7939 Add listener for validating inputs are not incorrectly modified

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* #7939 Integrate NonInplaceValidationListener into tests

* #7844 DL4J SameDiff fixes for variable minibatch size

* DL4J SameDiff fixes - ensure gradient for input placeholder is available

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Tweaks to ExternalErrorsFunction - use placeholders, make more robust

* Another fix

* More fixes

* More SameDiff/DL4J fixes

* Scope out scalar array creation in BaseScalarOp

* Remove debug code

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* [WIP] Final dev branch merge (#29)

* SameDiff: convertDataType and gradient check util improvements (#12)

* GradCheck util improvements

* StopGradient constructor + test

* SameDiff: Add datatype conversion

* Javadoc and add DataType.isNumerical()

* Small fix

* Fix SameDiff TF import test cases intermediate naming (workaround for bad default)

* TFGraphTestAllHelper: check intermediates in execution order

* Add missing debug listener

* [WIP] lstmBlock fix + other changes (#13)

- fixes lstmBlock issue
- changes NDArray method reshape(), permute(), transpose() by making them return instance instead of pointer
- CheckNumerics op
- fixes for ReduceBool IsInfOrNan & IsFinite

* Small test fix

* CheckNumerics op wrapper

* Compatibility of deserialization (#18)

Signed-off-by: Alexander Stoyakin <alexander.stoyakin@gmail.com>

* SameDiff: add activation gradient checking support for debugging (#19)

* SameDiff gradient checker: first pass on activation gradient checks

* Fixes + tests for activation gradient checking

* Javadoc

* [WIP] Some nd4j data type corrections (#20)

* Adjust data type

* Set correct Data type.

* Size of proper data type.

* fix averaged cpu load (#22)

* [WIP] Multiple dataset iterators (#27)

* Splitting dataset into arbitrary number

* Fixes

* Multiple split of iterator

* Test

* Test

* Some fixes

* signature change

* one more tweak

Signed-off-by: raver119 <raver119@gmail.com>

* one more test for sequential use of DataSetIteratorSplitter

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* Fixes

* Fixes

* one more test for Alexander

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* Some fixes

* Some fixes

* one more test for Alexander

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* minor test fix

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* Some fixes

* Some fixes

* couple of assertions tweaked

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* MDS splitter test :/

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* Minor refactoring

* Multi dataset

* Some fixes

* More tests

* Small number of test fixes/improvements (failures on CI) (#31)

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* [WIP] More CUDA stuff (#26)

* initial commit

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* LRN BP CUDA

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* less memory

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* Fixed bug with crop_and_resize op helper.

* get rid of unnecessary index-calculation dunction

Signed-off-by: Yurii <yurii@skymind.io>

* Fixed sort with nth_element cuda-based helper.

* Refactored nth_element.

* Refactored nth_element op and tests.

* Modified usage of dim array with sortTad routine.

* Refactored main routine of helper for non_max_image_suppression op.

* non_max_image_suppression op helper with cuda kernel implementation. Initial revision.

* fix vol2col cuda kernel

* meh

Signed-off-by: raver119 <raver119@gmail.com>

* topK concept

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* unsorted topK with scanWitdh of 1

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* correct vol2col tests

* sorted/unsorted topK

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* implementation and fixing col2im/col2vol

* Corrected usage flags with input/output with reverse op.

* dup is const now

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* percentile op

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* group tests for mapool2d

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* special test for george

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* less threads for sortTad

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* provide conv2d for cuda

Signed-off-by: Yurii <yurii@skymind.io>

* remove auther in sort tad kernel code

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* provide depthwise_conv2d for cuda

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* - max_pooling_with_argmax
- null check for special use

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* dts cuda

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* provide sconv2d for cuda

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* std cuda

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* Refactored non_max_suppression op to conform TF implementation.

* Improved suppression helper.

* provide pooling3d for cuda

Signed-off-by: Yurii <yurii@skymind.io>

* minor lstm rearrangements

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* more of minor lstm rearrangements

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* (bi)dynamic_rnn

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* templates init order

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* Refactored non_max_suppression op.

* Added cuda kernel for non_max_suppression.

* CPU sort by key/value

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* CPU sort TAD by key/value

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* CPU sort TAD by key/value tests

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* Eliminate compiler error with cuda implementation.

* - repaired gradCheck in cuda
- provide conv2d_bp for cuda

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* missed signature

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* provide depthwise_conv2d_bp for cuda

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* Implementation of lup helper with cuda kernel. Initial commit.

* further work on backprops for convolutions

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* CUDA linear sort by key/val

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* CUDA tad sort by key/val

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* start providing of backprop for pooling2d/3d

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* Added atomicAdd for bool datatype.

* dynamic partition concept

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* dynamic partition concept

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* dynamic partition scalar CUDA

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* important comment

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* fix pooling2d/3d backprop helpers

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* Added non-linear test with dynamic_partition.

* Improved test for dynamic_partition.

* dynamic_partition TAD concept

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* - dynamic_partition TAD CUDA impl
- dynamic_partition TAD CPU fix

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* - rewrite cpu code for usampling2d/3d
- write cuda code for usampling2d/3d

Signed-off-by: Yurii <yurii@skymind.io>

* dynamic_stitch CUDA vector case

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* dynamic_stitch CUDA TAD case concept

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* dynamic_stitch CUDA TAD case impl

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* Added tests for dynamic_stitch 3D-4D cases.

* minor tests tweaks

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* Fixed type check for dynamic stitch.

* min/max bp

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* rewrite code for upsampling2d/3d cpu

Signed-off-by: Yurii <yurii@skymind.io>

* reduce min/max/norm_max bp

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* lup implementation. Additional enhancements.

* provide code for upsamling2d/3d backprop

Signed-off-by: Yurii <yurii@skymind.io>

* weightedCrossEntropyWithLogits

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* Fixed template math atomicMul for 64bit ints.

* Refactored dynamic_partition_bp op.

* inverseBroadcast fix

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* DynamicPartitionBP test datatype fixed.

* - nd4j_atomicMul Windows fix
- cpu/NDArrayLambda.hpp excluded from CUDA

Signed-off-by: raver119 <raver119@gmail.com>
2019-06-27 18:37:04 +03:00
Alex Black cae4fc9760
Fixes, and ignores for known/logged failing issues (#7943)
Signed-off-by: AlexDBlack <blacka101@gmail.com>
2019-06-25 12:07:28 +10:00
Alex Black 68ea5f3688
Dev branch merge: dev_20190606 (#7904)
* correct logsoftmax looss (#2)

* Small SameDiff listener fix (#4)

* Various fixes (#6)

* #7839 Fix for asXMatrix and tests

* #7866 EmbeddingSequenceLayer dtype fix + test

* #7856 SameDiff save/load stream methods

* #7859 RegressionEvaluation rank 4 fix + tests + axis configuration

* EvaluationBinary 3d/4d

* More evaluation 3d/4d tests

* #7847 Evaluation empty checks

* Small test ifx

* #7848 Fix median edge case

* Improve DL4J samediff layer tests

* [WIP] FastText wrapper implemented (#8)

* FastText implemented

* Some fixes

* Fix shapes for wordsNearest

* Validation of input vectors

* Fixes

* Fixed test

* Thread tagged

* Some tweaks

* setContextClassLoader for DeallocatorServiceThread

* Numpy format tests (#1)

* Various fixes (#11)

* #7852 SameDiff gather fix

* #7892 SameDiff placeholder to constant conversion

* #7890 validate input rank for MLN/CG init methods

* Fix broken permute shape calculation

* Permute and gather fixes

* Tests

* #7850 LogSumExp fix + test

* Handful of test fixes

* Empty arrays with non-scalar shapes (#10)

* minor rearrangements for lambdas

* empty tensors with non-scalar shapes

* numpy empty tensors with non-scalar shapes

* few more empty tweaks

* Small fixes

* conv3d signature update

* micro fix in batchnorm mkldnn

* Import fixes

* Fix

* MKL-DNN update

* Small fill fix

* fill with empty input + test

* Fixes

* Small error improvement

* Fix

* one special test

* couple of fixes for lstm

* Rewrite TFGraphMapper.getNDArrayFromTensor to be maintainable and less error prone

* Fixes

* FP16

* Unsigned

* BFloat16

* Fill op - empty tweaks

* - couple of fixes for empty arrays construction
- stack updated

* strided slice fix

* one transform test

* provide method for reducing shapeInfo in case of input array is empty

* Fixed reduceAlongDimensions to use empty input properly.

* couple of broadcast tests

* couple of tests broadcast tests + tweak to make them pass

* add check of non-empty to methods producing sub-arrays

* Fixed reshapeC with zeros in shape.

* complete empty check in reduce_... legacy ops

* Concat and cumsum/prod

* Tweak to empty shape inference on import

* add empty check to the rest of reduce legacy ops

* one more test

* correct typo in evalReduceShapeInfoEmpty

* Added tests for reduce_* ops to tests with zero shapes.

* few more tests for empty reductions

* Fixed strided_slice op with empty case and tests.

* one more empty reduction test

* Fixed strided_slice test.

* add empty check to NDArray::reshapei

* infOrMax

* empty min/max with infinity tests

* made unstack working correctly with empty arrays

* few IndexReduce tests + tweaks for empty shapes

* add test for empty concat

* few tests fixed

* Validation fix for reductions on empty shapes

* Reverse fix

* Reduction shape calc fixes

* SameDiff.generateOutputVariable: don't use shape function to determine number of outputs

* Range fix

* - NDArray constructor updated for scalars/empty arrays
- few tests fixed

* More fixes

* Empty creator fixes

* concat fix

* concat fix

* TF import tests: allow 'both all NaN' and 'both all inf' to pass

* Slice, zero fraction, and reshape fixes

* transpose, gather

* Zero fraction

* scalar cast fix

* Empty reduction axis support

* few more tests fixed

* Fixed input checks conforming with TF for concat op and tests.

* few tests fixed

* matmul scalar shape fix

* Fixed checkout for data type and scalarity with concat to allow non-empty scalars with vector concats.

* broadcast bool fix

* few more tests

* few more tests

* correct evalReduceShapeInfoEmpty

* argmax/argmin + tests

* one more empty edge case + one more test

* argmax/argmin/realdiv_bp tweaks

* empty reshape test + fix

* Helper fixes

* Small fixes

* Gather test fix

* Gather test fix

* Small fixes

* reduce scalar zero values

* scalar mean workaround

* Remove debug code

* along dim mean workaround

* one more test

* - equalsTo() tweak for empty arrays
- one more test

* broadcast tweaks
2019-06-15 21:34:34 +10:00
Alex Black 32e5cc1945
First round of runtime test improvements (#7875)
* Capsnet test runtime improvements

* Slow test speedups

* Next round of test speed improvements

* More test improvements

* Improve test speed

* Next round of test speedups

* Another round

* More test speedups

* Another round

* Another round of test speedups

* Another round of speedups...

* CuDNN test speedups + more tests extending BaseDL4JTest

* Minor fix + more BaseDL4JTest use in other modules
2019-06-13 20:40:40 +10:00
skymindops b5f0ec072f Eclipse Migration Initial Commit 2019-06-06 15:21:15 +03:00