Commit Graph

118 Commits (c396fcb9605999e6586b95d460bd2524e0f8589e)

Author SHA1 Message Date
raver119 c396fcb960
More pre-release fixes (#456)
* - numPrefixBlocks fix for threshold_encoding
- temparrays pointers fixed

Signed-off-by: raver119@gmail.com <raver119@gmail.com>

* auto configuration of memory workspace for gradients sharing

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* limit sparse encoding message size

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* one more workspace test

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* one more CUDA-specific test

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* one more CUDA-specific workspace test

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* one more CUDA-specific workspace test

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* one more CUDA-specific workspace test

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* add separate host/device reset for circular workspace mode

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* new PW builder method for encoder memory amount

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* "inplace" execution for threshold encoding

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2020-05-13 08:12:07 +03:00
Alex Black b786418c5d
Fix an issue when creating DataBuffer/INDArray from ByteBuffer for multiple datatypes (#446)
* Fix missing dtypes when creating DataBuffer from ByteBuffer

Signed-off-by: Alex Black <blacka101@gmail.com>

* Revert LongIndexer -> ULongIndexer; fixes for UIntIndexer

Signed-off-by: Alex Black <blacka101@gmail.com>

* CUDA fix

Signed-off-by: Alex Black <blacka101@gmail.com>
2020-05-11 21:29:52 +10:00
raver119 10d6c3b024
do not relocate stuff on java side (#444)
Signed-off-by: raver119@gmail.com <raver119@gmail.com>
2020-05-09 12:56:45 +03:00
raver119 0613485654
compression ops (#436)
* Added declarations for decode/encode_bitmap ops.

Signed-off-by: shugeo <sgazeos@gmail.com>

* Added implementation for bitmap encoding/decoding ops.

Signed-off-by: shugeo <sgazeos@gmail.com>

* Added helpers for encode/decode bitmap ops.

Signed-off-by: shugeo <sgazeos@gmail.com>

* Refactored encodingBitmap helper.

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* threshold encode/decode skeleton

* helper skeleton

* minor import fix

* encoder shape fn & op impl

* thresholdEncode cpu impl

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* thresholdDecode cpu impl

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* Only cosmetical changes.

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* placeholder

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* Added cuda implementation for bitmap decode helper.

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* cuda thresholdEstimate

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* cuda thresholdDecode

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* next step

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* - nano cmakelist update (get rid of Clion section)
- fixed forgotten throw in AtomicTests

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* thesholdEncode cuda impl

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* Added tests for bitmap encoding/decoding ops.

Signed-off-by: shugeo <sgazeos@gmail.com>

* Fixed tests for encode/decode bitmaps.

Signed-off-by: shugeo <sgazeos@gmail.com>

* Refactored decode/encode helpers.

Signed-off-by: shugeo <sgazeos@gmail.com>

* Fixed crashes with bitmap decode/encode helpers.

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* bitmap encode/decode CPU

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* bitmap encode/decode CUDA

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* C API removed for threshold/bitmap encode

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* EncodeBitmap/DecodeBitmap Java side

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* EncodeThreshold/DecodeThreshold Java side

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* EncodeThreshold/DecodeThreshold Java side

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* few more tests for threshold encoding

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* minor test tweak

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* two special tests

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* encodeBitmap CPU fix

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* parallel_long/parallel_double proper spans fix

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* encodeThreshold CUDA fix

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* nano fix

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* grid tweaks

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* RTX adaptation for thresholdEncode

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* don't allow threshold encoding for length < 2

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* get rid of NDArrayCompressor in EncodingHandler

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* one more minor update of EncodingHandler

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* one more minor tweak of EncodingHandler

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* - matmul allows integer data types use
- EncodingHandler boundary default value
- few tests for integer matmul

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* minor fix of CUDA bitmap encode

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* boundary changed to integer everywhere

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* boundary changed to integer everywhere

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* re-enable CUDA deallocator

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* threshold encoder fix for systems without omp

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* - encode_threshold now requires non-negative boundary
- minor tweak in EncodingHandler

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* restore parallelism in decode_bitmap

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* fall back to omp for encode_bitmap cpu

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* single time casts

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* - additional test for encode_threshold
- sync buffers to device before calling for shape function

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Co-authored-by: shugeo <sgazeos@gmail.com>
2020-05-08 20:59:39 +03:00
Alex Black 88d3c4867f
Refactor packages to fix split package issues (#411)
* Refactor nd4j-common: org.nd4j.* -> org.nd4j.common.*

Signed-off-by: Alex Black <blacka101@gmail.com>

* Fix CUDA (missed nd4j-common package refactoring changes)

Signed-off-by: Alex Black <blacka101@gmail.com>

* nd4j-kryo: org.nd4j -> org.nd4j.kryo

Signed-off-by: Alex Black <blacka101@gmail.com>

* Fix nd4j-common for deeplearning4j-cuda

Signed-off-by: Alex Black <blacka101@gmail.com>

* nd4j-grppc-client: org.nd4j.graph -> org.nd4j.remote.grpc

Signed-off-by: Alex Black <blacka101@gmail.com>

* deeplearning4j-common: org.deeplearning4.* -> org.deeplearning4j.common.*

Signed-off-by: Alex Black <blacka101@gmail.com>

* deeplearning4j-core: org.deeplearning4j.* -> org.deeplearning.core.*

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* deeplearning4j-cuda: org.deeplearning4j.nn.layers.* -> org.deeplearning4j.cuda.*

Signed-off-by: Alex Black <blacka101@gmail.com>

* Import fixes

Signed-off-by: Alex Black <blacka101@gmail.com>

* deeplearning4j-nlp-*: org.deeplearning4.text.* -> org.deeplearning4j.nlp.(language).*

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* deeplearning4j-ui-model: org.deeplearning4j.ui -> org.deeplearning4j.ui.model

Signed-off-by: Alex Black <blacka101@gmail.com>

* datavec-spark-inference-{server/model/client}: org.datavec.spark.transform -> org.datavec.spark.inference.{server/model/client}

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* datavec-jdbc: org.datavec.api -> org.datavec.jdbc

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* Delete org.deeplearning4j.datasets.iterator.impl.MultiDataSetIteratorAdapter in favor of (essentially identical) org.nd4j.linalg.dataset.adapter.MultiDataSetIteratorAdapter

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* ND4S fixes

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* Fixes

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* nd4j-common-tests: org.nd4j.* -> org.nd4j.common.tests

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* Trigger CI

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* Fixes

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* #8878 Ignore CUDA tests on modules with 'nd4j-native under cuda' issue

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* Fix bad imports in tests

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* Add ignore on test (already failing) due to #8882

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* Import fixes

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* Additional import fixes

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2020-04-29 11:19:26 +10:00
raver119 bc8a9d1996
allocation of buffers backed by workspaces with 1 method call instead of 3 now (#420)
Signed-off-by: raver119@gmail.com <raver119@gmail.com>
2020-04-28 20:38:16 +03:00
Alexander Stoyakin ccb216a3ed
Fixing issues from Sonar report (#391)
* Fixing issues from Sonar report

* Proper logger of exceptions

* Coding style fixes

* Use dup parameter

* Cleanup, minor issues

* Cuda compilation fixed and some minor fixes
2020-04-23 08:36:49 +10:00
raver119 5ee37a22eb
Workspace ID fix (#400)
Signed-off-by: raver119 <raver119@gmail.com>
2020-04-21 07:31:57 +03:00
Alex Black fe516ae6cf
nd4j-jackson dependency fix (#398)
* Remove old nd4j-jackson dependencies

Signed-off-by: Alex Black <blacka101@gmail.com>

* Fix use of old/deprecated JSON serializer

Signed-off-by: Alex Black <blacka101@gmail.com>

* Fix deserialization

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* Delete test using deleted ser/de classes

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* Delete another copy of old test

Signed-off-by: Alex Black <blacka101@gmail.com>
2020-04-20 22:33:11 +10:00
Alex Black 191bda3228
Base namespace (#287)
* wip

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* up to assign operation.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* fix Imax, IMin.

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* concat.

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* dynamicPartition

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* new ops up to gte.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* wip

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* updated review items.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* up to matchCondition.

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* wip

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* up to OneHot.

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* wip. up to permute.

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* wip. up to rank.

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* wip. up to scatterMul.

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* resolving code review issues.

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* wip. inclides UnsortedSegment ops.

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* wip. up to stridedSlice.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* fix stridedSlice.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* first pass of SDBaseops.kt complete.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* fix review items.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* wip

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* put branch in compilable state.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* add NDBaseTest. fix dynamicPartition signature. failed fix of assign.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* make tests public.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* adds tests up to invertedPermutation.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* fix ScalarEquals, Assign.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* wip

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* updates NDBaseTest.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* updates 'check' comments based on test pass/fail.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* fix scalar ops. Update tests,

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* dev-tools review items. wip.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* dev-tools code review items.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* Test fixes

Signed-off-by: Alex Black <blacka101@gmail.com>

* complete review items.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* Comment for logged issue; fix test case

Signed-off-by: Alex Black <blacka101@gmail.com>

* Fixes

Signed-off-by: Alex Black <blacka101@gmail.com>

* More fixes

* wip

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* undo changes to Nd4jCpu.java

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* update tests.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* Fixes and regenerate

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Small test fixes

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* small fixes to tests.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* Cleanup

Signed-off-by: Alex Black <blacka101@gmail.com>

* Fixes

Signed-off-by: Alex Black <blacka101@gmail.com>

* Small CUDAExecutioner fix

Signed-off-by: Alex Black <blacka101@gmail.com>

* Fixes

Signed-off-by: Alex Black <blacka101@gmail.com>

* Small CudaExecutioner fix

Signed-off-by: Alex Black <blacka101@gmail.com>

* Another small CudaExecutioner fix

Signed-off-by: Alex Black <blacka101@gmail.com>

* Another small CudaExecutioner fix

Signed-off-by: Alex Black <blacka101@gmail.com>

Co-authored-by: Robert Altena <Rob@Ra-ai.com>
2020-04-20 16:57:00 +10:00
Oleh 3d15706ffa
Lin_space operation improve (#373)
* libnd4j update linspace op

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j #8513 update lin_space op, tests added

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* - minor linspace tweaks (num_elements now iArg)
- java linspace updates
- couple of additional tests for linspace

Signed-off-by: raver119 <raver119@gmail.com>

* roll back timeout change

Signed-off-by: raver119 <raver119@gmail.com>

Co-authored-by: raver119 <raver119@gmail.com>
2020-04-16 14:53:56 +03:00
raver119 12ba1fa406
Few minor fixes (#381)
* - 1D indexing fix
- couple of new tests for 1D indexing

Signed-off-by: raver119 <raver119@gmail.com>

* percentile fix + test

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* wrong signature used in test

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2020-04-16 13:25:13 +03:00
raver119 75af392671
- memcpy fix + validation for CUDA: skip memcpu if length < 1 (#375)
- Reset cached context after device affinity change

Signed-off-by: raver119 <raver119@gmail.com>
2020-04-14 18:47:46 +03:00
Samuel Audet 6fcd078c5e
Update dependencies to just released JavaCPP and JavaCV 1.5.3 (#374)
Signed-off-by: Samuel Audet <samuel.audet@gmail.com>
2020-04-14 19:36:14 +10:00
Alex Black 99c727f15b
Add javacpp classifier dependency to nd4j-native and nd4j-cuda (#366)
Signed-off-by: Alex Black <blacka101@gmail.com>
2020-04-09 10:00:27 +10:00
Andrii T d86dd5b131
DL4J and SameDiff integration tests + LSTMLayer java op class (#353)
* init in this branch

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* Lenetet Mnist workflow

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* small fix for calculations

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* for Alex to check placeholder null pointer issue

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* CNN3D workflow

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* state for launching on dxg to regenterate dl4j examples

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* SD RNN test case workflow

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* small fixes

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* checkpoint at lstmBlock: Input array 1 (x) rank must be got input with rank 2 issue

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* Fix LSTMLayer inputs order

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* lstm mismatch with c++ op issue

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* LSTMLayer config draft

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* LSTMLayer config draft v2

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* have doubt I had to do this

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* NDRNN generated by codegen

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* LSTMLayerTestCases draft

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* minor fixes again

* added LSTMLayer testcases to nd4j-tests + setted Preconditions in LSTMLayer constructors

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* added lost SDCNNtestcases

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* overrided getNumOutputs from DynamicCustomOp in LSTMLayer and reorganized LSTMLayerOutputs according to cpp op

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* finished with LSTMLayerOutputs

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* Fix MKLDNN platform checks (i.e., when MKLDNN can be used vs. not)

Signed-off-by: Alex Black <blacka101@gmail.com>

* Fix LSTMLayerWeights input order

Signed-off-by: Alex Black <blacka101@gmail.com>

* More fixes

Signed-off-by: Alex Black <blacka101@gmail.com>

* minor fixes

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* fixed LSTMLayer testcases

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* finished SameDiffRNNTestCase

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* finished all testcases + minor fixes

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* Multiple generation-related fixes

Signed-off-by: Alex Black <blacka101@gmail.com>

* Fix multiple issues

Signed-off-by: Alex Black <blacka101@gmail.com>

* More fixes

Signed-off-by: Alex Black <blacka101@gmail.com>

* LSTM fixes

Signed-off-by: Alex Black <blacka101@gmail.com>

* Regenerate ND4J namespaces and fix multiple issues

Signed-off-by: Alex Black <blacka101@gmail.com>

* changed SameDiffRNNTestCase

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* Small fix

Signed-off-by: Alex Black <blacka101@gmail.com>

* added  Nd4j.getRandom().setSeed(12345) where needed

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* #8828 Fix ND4J profiler NaN/Inf checks when using OpContext

Signed-off-by: Alex Black <blacka101@gmail.com>

* #8828 Fix ND4J profiler NaN/Inf checks when using OpContext

Signed-off-by: Alex Black <blacka101@gmail.com>

* Tweak to weight init for SameDiff CNN test case

Signed-off-by: Alex Black <blacka101@gmail.com>

* Tweaks for test cases

Signed-off-by: Alex Black <blacka101@gmail.com>

* Ignore failing tests until fixed

Signed-off-by: Alex Black <blacka101@gmail.com>

* Fix

Signed-off-by: Alex Black <blacka101@gmail.com>

Co-authored-by: Alex Black <blacka101@gmail.com>
2020-04-09 00:20:48 +10:00
raver119 04b2b4f9b6
Few fixes (#361)
* INDArray.close() fix for CPU

Signed-off-by: raver119 <raver119@gmail.com>

* - BroadcastableBoolOp introduced
- ConfusionMatrix now supports explicit DataType argument

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* confusion_matrix: dtype is still optional

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* disable bert tests in debug builds

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* Affinity fix

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* minor workspace tweak to allow close() on scoped out borrowed workspace

Signed-off-by: raver119 <raver119@gmail.com>
2020-04-06 21:01:59 +03:00
Oleh 69c92ca5ae
Learning updaters for gradient (#335)
* libnd4j raw implementation of sgd upader

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j some corrections and simple test added

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j some corrections after discussion

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j integrate applyScalar

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j raw implementation of rmsPropUpdater on cpu

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j fix operations declaration

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j rmsPropUpdater added, test cases for sgd, etc

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j fixed several typos

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j some fixes and improvements for rmsPropUpdater based on Java tests

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j fixed cuda implementation, update tests and corrected behavior according java tests

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* libnd4j adaGrad updater added

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* libnd4j one minor fix for ada grad

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* libnd4j several more fixes for ada_grad

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* libnd4j nesterovs updater added

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* libnd4j fixed nesterovs updater behavior, several typos and rename file

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* libnd4j one minor typo

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* libnd4j ada max updater added

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* libnd4j fixed several typos in adaMax updater

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* libnd4j fixed several typos in adaMaxUpdater

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* libnd4j several fixes for adaMax, added Adam Updater

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* libnd4j adaDeltaUpdater added, minor fixes for adamUpdater

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* libnd4j several fixes for adaDeltaUpdater

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* libnd4j nadamUpdater added

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* libnd4j one more correction for nadam updater

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* libnd4j several fixes for nadam updater and added amsGradUpdater

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* libnd4j several typos fixed in amsGradUpdater

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* libnd4j some corrections and added f order support rmsProp updater

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* libnd4j added support of f order for all updaters and modify tests for testing in place

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* libnd4j fixed issues for updates when not in place mode used, added tests for f order

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* libnd4j added input shape checks

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* libnd4j some corrections for different cases handling

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* libnd4j some code clean up and optimize per request

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* libnd4j updaters refactoring after review

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* SgdUpdater wrapper

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* first test

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* RmsPropUpdater added

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* NadamUpdater + NesterovsUpdater

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* AmsGradUpdater

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* AdamUpdater added

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* AdaGradUpdater + AdaDeltaUpdater + AdaMaxUpdater

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* AdaGradUpdater test added

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* libnd4j remove input parameters parsing through NDArray, split implementation of helpers to separate files, added some rename, etc

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* libnd4j next step to split operations implementation into separate files

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* libnd4j merge master and minor corrections

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* libnd4j revert some changes of split implementation

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* libnd4j forgot to add header file

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* public default constructors

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* ImportClassMapping updated

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2020-03-23 07:28:31 +03:00
Alex Black f79207033b
SameDiff multi-threaded inference (#263)
* #8682 Don't log openmp BLAS threads for CUDA

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* #8654 Add SameDiff multi-threaded tests

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* Switching to op context for SameDiff exec

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* Next steps

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* Most back to passing

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* Fixes

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* Better tests, test refactoring

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* Small tweak

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* Code duplication reduction

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* More code deduplication

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* CUDA fixes

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* More CUDA fixes

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* More fixes

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* Small fix

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* ND4S small fixes

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2020-03-20 21:24:39 +11:00
raver119 7a2ac800dd
Nullify (#304)
* initial commit

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* bunch of tweaks

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* hamming distance nullification

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* Add output array value assignment for testing/debugging

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* don't assign empty arrays

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* conv2d/conv3d/depthwise2d nullified

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* conv2d/conv3d/depthwise2d nullified

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* conv2d/conv3d/depthwise2d nullified

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* few more fixes

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* im2col

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* pooling?

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* more nullified

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* ismax nullified

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* rollback ismax nullification

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* synchronized cublas handle use on per-device basis

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* hiding method from jcpp

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* get rid of test assigns in DeclarableOp

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* get rid of assigns

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* proper deviceId is back

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* include fixed

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2020-03-20 08:49:28 +03:00
Adam Gibson 0cf4a45573
Fixes #8763 (#310)
* Fix cmake detection in msys

* Fix toolchain file on windows

* Make android 64 bit work

* Fix libnd4j build script on msys

* Update build script for windows/linux

* Encoding issue for ci

* Update pom.xml

* Update pom.xml

* Update pom.xml

* Remove mingw

* Ensure android x86 builds are inline with arm builds

* Update toolchains and env variables for x86

* Move profile for build program up to parent

* Fix blas vendor and add comment

* Update cuda presets version

* Set default value and move properties back to child pom

* Change program from hard coded to use the script as the program

* Update pom.xml

* Update pom.xml

* Static lib fix

* Update static lib output

* Get rid of old comments

* Update static for buiding
2020-03-19 14:53:21 +09:00
Shams Ul Azeem 9c77bfa85f
Support for more numpy datatypes (#241)
* Adding more datatypes support in datavec-python

* Using numpy C API for creating numpy arrays

* Adding parameterized tests

* Adding support for BFLOAT16 (by converting it to FLOAT)

* Cleanup

* Using casting instead of creating an array

* Giving out a warning while casting array from BFLOAT16 to FLOAT

* Add syncToPrimary and syncToSpecial methods to BaseDataBuffer

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* Python exec: sync to host before passing pointers

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* Added copyright header

* use np api (#267)

* python exec / numpy - check object type before cast (#268)

* use np api

* verify object before cast

* fix cong

* cuda fix

* inplace test + tiny fix

* more test

* fix double alloc

* rem tags

* fix cuda check

* Fix implicit CUDA dependency in datavec-python tests; remove new method, add test

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Co-authored-by: Alex Black <blacka101@gmail.com>
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2020-03-19 00:48:37 +11:00
raver119 bac130bd78
CUDA host pointer fix (#322)
* CUDA fix: host pointer propagation

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* disable logging

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2020-03-16 12:07:34 +03:00
Yurii Shyrma e42b4e96c3
correct output empty shapes deducing in split op (#311)
* - correct output empty shapes deducing in split op

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* java test fixed

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* - split broadcast::exec function on individual functions corresponding to switch arg

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* - split broadcast::exec _int and _bool function on individual functions corresponding to switch arg

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2020-03-12 18:25:54 +03:00
Alex Black a80fb99a5f
DL4J integrations tests updates + add SameDiff support (#298)
* Revive and start updating DL4J integration tests

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* Add SameDiff support - first pass

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* SameDiff test case generation

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* SameDiff integration tests polishing

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* More SameDiff integration test fixes

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* Final polish

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* Small test tweak

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2020-03-07 22:44:41 +11:00
raver119 63fa3c2ef3
libnd4j polishing (#273)
* initial set of include changes

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* one more tweak

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* few more rearrangements

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* few more rearrangements

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* few more rearrangements

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* cuda includes rearrangements

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* java update

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* = namespace changed to sd
- few CMake variables renamed with SD_ prefix

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* java update

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* LoopKind minor fix

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* few more changes

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* few more changes

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* few more changes

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* sanitizer is optional now

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* dev tests updated

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* few more changes

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* last update

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* java update

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2020-03-02 12:49:41 +03:00
Yurii Shyrma f7a9190407
profiling of concat op (both cuda and cpu) (#151)
* - profiling of concat op (both cuda and cpu)

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* better comparison for large concat

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* - further improving of concat op

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* some loggin

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* - add possibility to verify presence of trailing unities in shape and set strides/ews correspondingly
- restrict second simple case in concat op to c order only

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* - move concat op to specials_single.cpp file

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* - get rid of second concat op declaration in transforms.cpp file

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2020-02-20 21:19:01 +03:00
raver119 9e3c1b02b1
Perf improvements (#242)
* initial commit

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* meh

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* better ExpandDims impl

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* better Squeeze impl

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* better Softmax impl

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* one test disabled

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* more accurate impl

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* - GraphProfiler now prints full shapeInfo instead of shape
- softmax typo fix

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2020-02-14 16:20:31 +03:00
raver119 1dfac9a736
DataBuffer.write() tweak (#221)
* special workaround methods for DataBuffer.write

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* one test removed

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* more of unsynced

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* missing asLong for BaseCudaDataBuffer

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2020-02-07 18:16:11 +03:00
raver119 a0da5a9e47
Events removed from Java (#219)
* replace mutex with lock_guards

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* Events ditched from Java CUDA logic

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2020-02-07 12:34:55 +03:00
Alex Black 569a46f87d
Fixes (#213)
* Increase timeouts for 2 tests occasionally failing on CI

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* Explicitly set character encoding via argline for maven surefire tests

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* CUDA gradient check timeout fix + simple rnn masking fix

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2020-02-05 17:07:36 +11:00
raver119 5d28e6143d
OpContext handling (#214)
* nano tweaks

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* OpContext tweaks

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* OpContext deallocators

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* get rid of few mkldnn safety checks

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* databuffer setSpecial fix

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2020-02-05 07:27:24 +03:00
raver119 81efa5c3b6
[WIP] one small fix (#207)
* one small fix

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* assert added

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2020-02-02 19:17:26 +03:00
raver119 5d98cfcf47
Configurable DataType for ops (#201)
* initial commit

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* - one more test for OneHot with dtype
- one more signature in Nd4j

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* ones_as/zeros_as now accept dtype

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* one more test

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* - more updates for configurable data types
- ones_as/zeros_as java side + tests

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* few c++ tests fixed

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* few more changes around DArgs

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2020-01-30 18:46:12 +03:00
raver119 ba961c7601
DataTypes & FlatBuffers (#197)
* flatbuffers version upgrade

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* flatbuffers version upgrade java side

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* flatbuffers dependency version upgrade java side

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* MKLDNN version upgrade

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* DArgs first pass

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* signatures first pass

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* signatures second pass

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* signatures third pass

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* signatures third pass

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* signatures fourth pass

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* signatures fifth pass

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* flatbuffers UI version upgrade java side

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* flatbuffers ui update

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* flatbuffers downgrade

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* flatbuffers downgrade java side

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2020-01-30 10:07:24 +03:00
raver119 9f719488b9
CUDA sync tweaks (#194)
* ThreadLocal cache for CudaContext

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* temp commit

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* remove unwanted synchronization

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2020-01-28 10:55:06 +03:00
raver119 7ef0ef907e
Packages fix (#193)
* packages fix

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* few imports fixed

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* few imports fixed

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2020-01-27 23:04:21 +03:00
raver119 531a72fabd
execution mode (#183)
* initial commit

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* execution mode java side

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* meh

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* move exec mode to ContextPrototype

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* copyrights

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2020-01-27 10:00:07 +03:00
raver119 5d69069177
[WIP] Memory limits (#167)
* initial commit

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* one more initial commit

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* additional initial commit

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* subsequent initial commit

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* initial commit testing

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* initial commit per device

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* initial commit per group

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* initial commit for cuda

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* initial commit for cuda + few missed lines

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* initial commit for cuda + missed includes

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* initial commit for cuda + one more missed include

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* initial commit shouldn't count host mem as dev0 in cuda

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* initial commit that tracks HOST group limits for CUDA

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* initial commit with some Environment changes

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* initial commit with more Environment changes

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* initial commit with maxMasterThreads fix

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* initial commit with maxMasterThreads fix

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* initial commit without maxMasterThreads exception

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* initial commit without Nd4jULong in Environment

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* add sleep and more iterations for OOM cases

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* limits propagation from java side

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* - consume ErrorCode every time
- one test for memory limits

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* unordered_map

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* unordered_map

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* unordered_map

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* RSub op mapping fixed

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* typo fixed

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* one bad test fixed

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2020-01-24 10:11:09 +03:00
raver119 256c9d20b0
alloc check for RNG (#179)
* missing alloc validation in RandomGenerator for CUDA

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* set error message if rng alloc failed

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* check for error code during RNG creation in java

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2020-01-23 09:51:02 +03:00
raver119 25db3a44f1
[WIP] few fixes for tests (#177)
* nd4j-aeron profiles

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* nd4j-aeron profiles

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* skip one long test

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* skip one long test

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* kryo profile

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* few more profiles

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* few more profiles

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* few more profiles

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2020-01-22 16:12:30 +03:00
Alex Black a25bb6a11c
Unit/integration test split + test speedup (#166)
* Add maven profile + base tests methods for integration tests

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* Switch from system property to environment variable; seems more reliable in intellij

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* Add nd4j-common-tests module, and common base test; cleanup

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* Ensure all ND4J tests extend BaseND4JTest

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* Test spam reduction, import fix

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* Add test logging to nd4j-aeron

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* Fix unintended change

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* More test spam cleanup

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* W2V iterator test unit/integration split

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* More NLP test speedups

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* Avoid debug/verbose mode leaking between tests

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* test tweak

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* Arbiter extends base DL4J test

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* Arbiter test speedup

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* nlp-uima test speedup

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* More test speedups

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* Fix ND4J base test

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* Few small ND4J test speed improvements

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* DL4J tests speedup

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* More tweaks

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* Even more test speedups

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* More tweaks

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* Various test fixes

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* More test fixes

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* Add ability to specify number of threads for C++ ops in BaseDL4JTest and BaseND4JTest

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* nd4j-aeron test profile fix for CUDA

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2020-01-22 22:27:01 +11:00
raver119 7783012f39
cuDNN integration (#150)
* initial commit

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* one file

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* few more includes

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* m?

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* const

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* cudnn linkage in tests

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* culibos

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* static reminder

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* platform engine tag

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* HAVE_CUDNN moved to config.h.in

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* include

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* include

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* skip cudnn handle creation if there's not cudnn

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* meh

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* target device in context

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* platform engines

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* platform engines

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* allow multiple -h args

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* move mkldnn out of CPU block

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* minor tweaks

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* next step

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* test for MKL/CUDNN combined use

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* - provide additional code for conv2d ff based on cudnn api, not tested yet

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* - fixing several cuda bugs which appeared after cudnn lib had been started to use

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* - implementation of conv2d backprop op based on cudnn api

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* - implementaion of conv3d and conv3d_bp ops based on cudnn api

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* - bugs fixing in conv3d/conv3d_bp ops (cudnn in use)

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* - implementation of depthwiseConv2d (ff/bp) op based on cudnn api

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* - implementation of batchnorm ff op based on cudnn api

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* - disable cudnn batchnorm temporary

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* - add minor change in cmake

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* engine for depthwise mkldnn

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* couple of includes

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* - provide permutation to cudnn batchnorm ff when format is NHWC

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* lgamma fix

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* - eliminate memory leak in two tests

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2020-01-20 21:32:46 +03:00
raver119 29e8e09db6
String changes (#3)
* initial commit

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* CUDA DataBuffer expand

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* few tweaks for CUDA build

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* DataBuffer setters for bufers

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* couple of wrappers

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* - few more Nd4j signatures removed
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* one special test

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* empty string array init

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* one more test in cpp

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* memcpy instead of databuffer swap

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* special InteropDataBuffer for front-end languages

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* few tweaks for java

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* pointer/indexer actualization

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* CustomOp returns list for inputArumgents and outputArguments instead of array

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* redundant call

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* print_variable op

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* - view handling (but wrong one)
- print_variable java wrapper

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* one more test

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* - empty arrays handling

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* - deserialization works now

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* minor fix

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* meh

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* one more fix

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* initial cuda commit

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* print_variable message validation

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* CUDA special buffer size

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* minor update to match master changes

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* - consider arrays always actual on device for CUDA
- additional PrintVariable constructor
- CudaUtf8Buffer now allocates host buffer by default

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* meh

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* - print_variable now allows print from device

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* InteropDataBuffer data type fix

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* ...

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* disable some debug messages

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* master pulled in

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* couple of new methods for DataBuffer interop

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* java side

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* offsetted constructor

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* new CUDA deallocator

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* CUDA backend torn apart

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* CUDA backend torn apart 2

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* CUDA backend torn apart 3

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* - few new tests
- few new methods for DataBuffer management

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* few more tests + few more tweaks

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* two failing tests

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* one more test

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* two failing tests pass

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* now we pass DataBuffer to legacy ops too

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* Native DataBuffer for legacy ops, Java side

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* CPU java side update

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* CUDA java side update

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* no more prepare/register action on java side

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* NDArray::prepare/register use now accepts vectors

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* InteropDataBuffer now has few more convenience methods

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* java bindings update

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* tick device in NativeOps

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* Corrected usage of OpaqueBuffer for tests.

* Corrected usage of OpaqueBuffer for java tests.

* NativeOpsTests fixes.

* print_variable now returns scalar

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* one more test

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* compat_string_split fix for CUDA

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* - CUDA execScalar fix
- CUDA lazyAllocateHostPointer now checks java indexer/pointer instead of native pointer

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* legacy ops DataBuffer migration prototype

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* ignore device shapeinfo coming from java

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* minor fix

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* minor transformAny fix

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* minor tweak for lazy host allocation

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* - DataBuffer::memcpy method
- bitcast now uses memcpy

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* - IndexReduce CUDA dimension buffer fix

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* views for CPU and CUDA

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* less spam

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* optional memory init

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* async memset

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* - SummaryStats CUDA fix
- DataBuffer.sameUnderlyingData() impl
- execBroadcast fix

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* - reduce3All fix
switch to CUDA 10 temporarily

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* CUDA version

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* proper memory deallocator registration

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* HOST_ONLY workspace allocation

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* temp commit

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* few conflicts resolved

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* few minor fixes

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* one more minor fix

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* NDArray permute should operate on JVM primitives

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* - create InteropDataBuffer for shapes as well
- update pointers after view creation in Java

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* - addressPointer temporary moved to C++

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* CUDA: don't account offset twice

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* CUDA: DataBuffer pointer constructor updated

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* CUDA NDArray.unsafeDuplication() simplified

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* CUDA minor workspace-related fixes

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* CPU DataBuffer.reallocate()

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* print_affinity op

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* print_affinity java side

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* CUDA more tweaks for data locality

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* - compat_string_split tweak
- CudaUtf8Buffer update

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* INDArray.close() mechanic restored

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* one more test fixed

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* - CUDA DataBuffer.reallocate() updated
- cudaMemcpy (synchronous) restored

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* one last fix

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* bad import removed

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* another small fix

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* one special test

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* fix bad databuffer size

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* release primaryBuffer on replace

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* higher timeout

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* disable timeouts

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* dbCreateView now validates offset and length of a view

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* additional validation for dbExpand

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* restore timeout back again

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* smaller distribution for rng test to prevent timeouts

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* CUDA DataBuffer::memcpy now copies to device all the time

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* OpaqueDataBuffer now contains all required methods for interop

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* some javadoc

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* GC on failed allocations

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* minoe memcpu tweak

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* one more bitcast test

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* - NDArray::deviceId() propagation
- special multi-threaded test for data locality checks

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* DataBuffer additional syncStream

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* DataBuffer additional syncStream

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* one ignored test

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* skip host alloc for empty arrays

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* ByteBuffer support is back

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* DataBuffer::memcpy minor fix

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* few minor prelu/bp tweaks

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* nullify-related fixes

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* PReLU fixes (#157)

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* Build fixed

* Fix tests

* one more ByteBuffer signature restored

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* nd4j-jdbc-hsql profiles fix

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* nd4j-jdbc-hsql profiles fix

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* PReLU weight init fix

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* Small PReLU fix

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* - INDArray.migrate() reactivated
- DataBuffer::setDeviceId(...) added
- InteropDataBuffer Z syncToDevice added for views

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* missed file

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* Small tweak

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* cuda 10.2

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* minor fix

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Co-authored-by: shugeo <sgazeos@gmail.com>
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2020-01-04 13:27:50 +03:00
raver119 451d9d57fd
shape function override (#161)
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2020-01-04 09:06:44 +03:00
Alex Black 29104083cc
Various fixes (#143)
* #8568 ArrayUtil optimization

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* #6171 Keras ReLU and ELU support

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* Keras softmax layer import

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* #8549 Webjars dependency management

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* Fix for TF import names ':0' suffix issue / NPE

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* BiasAdd: fix default data format for TF import

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* Update zoo test ignores

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* #8509 SameDiff Listener API - provide frame + iteration

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* #8520 ND4J Environment

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* Deconv3d

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* Deconv3d fixes + gradient check

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* Conv3d fixes + deconv3d DType test

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* Fix issue with deconv3d gradinet check weight init

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* #8579 Fix BaseCudaDataBuffer constructor fix for UINT16

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* DataType.isNumerical() returns false for BOOL type

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* #8504 Reduce Spark log spam for tests

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* Clean up DL4J gradient check test spam

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* More Gradient check spam reduction

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* SameDiff test spam reduction

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* Fixes for FlatBuffers mapping

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* SameDiff log spam cleanup

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* Tests should extend BaseNd4jTest

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* Remove debug line in c++ op

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* ND4J test spam cleanup

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* DL4J test spam reduction

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* More Dl4J and datavec test spam cleanup

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* Fix for bad conv3d test

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* Additional test

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* Embedding layers: don't inherit global default activation function

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* Trigger CI

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* Consolidate all BaseDL4JTest classes to single class used everywhere; make timeout configurable per class

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Test fixes and timeout increases

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Timeouts and PReLU fixes

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Restore libnd4j build threads arg for CUDA build

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Increase timeouts on a few tests to avoid spurious failures on some CI machines

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* More timeout fixes

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* More test timeout fixes

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Tweak timeout for one more test

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Final tweaks

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* One more ignore

Signed-off-by: AlexDBlack <blacka101@gmail.com>
2020-01-04 13:45:07 +11:00
Alex Black ce02b6fae7
Small fixes (#140)
* Allow scalar op result array auto allocation

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Don't swallow underlying exception for calculateOutputShape execution failures

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Ignore for known keras failure

Signed-off-by: AlexDBlack <blacka101@gmail.com>
2019-12-21 17:00:46 +11:00
raver119 a5f5ac72b1
reduce bool changes (#118)
* reduce bool changes

Signed-off-by: raver119 <raver119@gmail.com>

* reduce bool tweaks

Signed-off-by: raver119 <raver119@gmail.com>
2019-12-09 20:08:59 +03:00
shugeo e09a785232 Shugeo resize fix5 (#102)
* Refactored resize images ops to use TF-like bool args as input.

* Refactored helpers for cpu implementation of resize_bilinear and resize_nearest_neighbor ops.

* Refactored cuda implementation for image.resize_bilinear and image.resize_nearest_neighbor ops helpers.

* Refactored nearest_neighbor resize op.

* Added a pair of tests for special case of resize_bilinear algorithm.

* Fixed issue with resize_bilinear op.

* Refactored cpu implementation for helpers with resize_nearest_neighbor op.

* Final fixed for resize ops to conform TF v.1.5

* Refactored cuda helpers for resize_neares_neighbor op.

* Fixed resize_bilinear to accept proper data.

* Fixed issue with non-float input for resize_bilinear op.

* Refactored cuda helper for resize_bilinear to proper process non-float inputs.

* Added tests for resize_bilinear to int inputs.

* Fixed ResizeBilinear wrapper

* Tests fixed

* Fixed float and bool constant to avoid overflow for some kind of compilers.

* Corrected float constants with float data type.

* Added f suffix for float constants.

* Corrected float constant to avoid overflow with initializing lists.

* Corrected float initializing list with float input.

* Corrected bool constant with initalizing list.

* Corrected float and bool values with initializing lists.

* Fixed wrong constant.

* Fixed issue with 1x1 input picture for resize.

* ResizeBilinear default values on import fix

Signed-off-by: raver119 <raver119@gmail.com>
2019-12-05 22:05:33 +03:00
Fariz Rahman 0d14032d26 TF Updates (#87)
* tf updates

* pom

* copyright

* graphrunner tests

* gpu test

* getSessionOptionsConfigProto

* dtype fix

* Small fix

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* cast graphs

* savemodel test fix

* testresource instead of local

* Logging level

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* gson dependency issue fix; fix GraphRunnerTest for no session options config case

Signed-off-by: Alex Black <blacka101@gmail.com>

* Final tweaks

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* few minor fixes

Signed-off-by: raver119 <raver119@gmail.com>

* one more fix

Signed-off-by: raver119 <raver119@gmail.com>

* Tweak configuration for GraphRunnerTest

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* nd4j align config

* tf warmup
2019-12-04 17:11:03 +11:00