Commit Graph

16 Commits (a17a579b1f81b156e59e3a53ea8bda32fae641f6)

Author SHA1 Message Date
Fariz Rahman 9ca679e080
python4j-numpy (#475)
* 'initial'

* 'impl'

* tests

* <T>

* more tests

* scalar fixes

* lazy setup jobs

* more tests

* multithreading wip

* multithreading fix

* bytebuffer working

* nits

* inplace exec fixes

* attempt linux cpu fix

* rollback

* list fixes

* disable gc

* log

* bump jcpp + fixes

* #8985 GradientSharingTrainingTest ignore for logged issue

Signed-off-by: Alex Black <blacka101@gmail.com>

* memview fixes

* fix?

Co-authored-by: Alex Black <blacka101@gmail.com>
2020-06-16 11:43:10 +10:00
Alex Black deb87b04f7
Assorted fixes (#466)
* Timeouts and fixes

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* Increase default timeout to 90s due to slow PPC CI machines

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* Another timeout tweak

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* Svhn

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2020-05-15 15:34:08 +10:00
raver119 0613485654
compression ops (#436)
* Added declarations for decode/encode_bitmap ops.

Signed-off-by: shugeo <sgazeos@gmail.com>

* Added implementation for bitmap encoding/decoding ops.

Signed-off-by: shugeo <sgazeos@gmail.com>

* Added helpers for encode/decode bitmap ops.

Signed-off-by: shugeo <sgazeos@gmail.com>

* Refactored encodingBitmap helper.

Signed-off-by: shugeo <sgazeos@gmail.com>

* threshold encode/decode skeleton

* helper skeleton

* minor import fix

* encoder shape fn & op impl

* thresholdEncode cpu impl

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* thresholdDecode cpu impl

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* Only cosmetical changes.

Signed-off-by: shugeo <sgazeos@gmail.com>

* placeholder

Signed-off-by: raver119@gmail.com <raver119@gmail.com>

* Added cuda implementation for bitmap decode helper.

Signed-off-by: shugeo <sgazeos@gmail.com>

* cuda thresholdEstimate

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* cuda thresholdDecode

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* next step

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* - nano cmakelist update (get rid of Clion section)
- fixed forgotten throw in AtomicTests

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* thesholdEncode cuda impl

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* Added tests for bitmap encoding/decoding ops.

Signed-off-by: shugeo <sgazeos@gmail.com>

* Fixed tests for encode/decode bitmaps.

Signed-off-by: shugeo <sgazeos@gmail.com>

* Refactored decode/encode helpers.

Signed-off-by: shugeo <sgazeos@gmail.com>

* Fixed crashes with bitmap decode/encode helpers.

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* bitmap encode/decode CPU

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* bitmap encode/decode CUDA

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* C API removed for threshold/bitmap encode

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* EncodeBitmap/DecodeBitmap Java side

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* EncodeThreshold/DecodeThreshold Java side

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* EncodeThreshold/DecodeThreshold Java side

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* few more tests for threshold encoding

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* minor test tweak

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* two special tests

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* encodeBitmap CPU fix

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* parallel_long/parallel_double proper spans fix

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* encodeThreshold CUDA fix

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* nano fix

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* grid tweaks

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* RTX adaptation for thresholdEncode

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* don't allow threshold encoding for length < 2

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* get rid of NDArrayCompressor in EncodingHandler

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* one more minor update of EncodingHandler

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* one more minor tweak of EncodingHandler

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* - matmul allows integer data types use
- EncodingHandler boundary default value
- few tests for integer matmul

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* minor fix of CUDA bitmap encode

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* boundary changed to integer everywhere

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* boundary changed to integer everywhere

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* re-enable CUDA deallocator

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* threshold encoder fix for systems without omp

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* - encode_threshold now requires non-negative boundary
- minor tweak in EncodingHandler

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* restore parallelism in decode_bitmap

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* fall back to omp for encode_bitmap cpu

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* single time casts

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* - additional test for encode_threshold
- sync buffers to device before calling for shape function

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Co-authored-by: shugeo <sgazeos@gmail.com>
2020-05-08 20:59:39 +03:00
Alex Black 88d3c4867f
Refactor packages to fix split package issues (#411)
* Refactor nd4j-common: org.nd4j.* -> org.nd4j.common.*

Signed-off-by: Alex Black <blacka101@gmail.com>

* Fix CUDA (missed nd4j-common package refactoring changes)

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* nd4j-kryo: org.nd4j -> org.nd4j.kryo

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* Fix nd4j-common for deeplearning4j-cuda

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* nd4j-grppc-client: org.nd4j.graph -> org.nd4j.remote.grpc

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* deeplearning4j-common: org.deeplearning4.* -> org.deeplearning4j.common.*

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* deeplearning4j-core: org.deeplearning4j.* -> org.deeplearning.core.*

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* deeplearning4j-cuda: org.deeplearning4j.nn.layers.* -> org.deeplearning4j.cuda.*

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* Import fixes

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* deeplearning4j-nlp-*: org.deeplearning4.text.* -> org.deeplearning4j.nlp.(language).*

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* deeplearning4j-ui-model: org.deeplearning4j.ui -> org.deeplearning4j.ui.model

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* datavec-spark-inference-{server/model/client}: org.datavec.spark.transform -> org.datavec.spark.inference.{server/model/client}

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* datavec-jdbc: org.datavec.api -> org.datavec.jdbc

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* Delete org.deeplearning4j.datasets.iterator.impl.MultiDataSetIteratorAdapter in favor of (essentially identical) org.nd4j.linalg.dataset.adapter.MultiDataSetIteratorAdapter

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* ND4S fixes

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* Fixes

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* nd4j-common-tests: org.nd4j.* -> org.nd4j.common.tests

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* Trigger CI

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* Fixes

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* #8878 Ignore CUDA tests on modules with 'nd4j-native under cuda' issue

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* Fix bad imports in tests

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* Add ignore on test (already failing) due to #8882

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* Import fixes

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* Additional import fixes

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2020-04-29 11:19:26 +10:00
Alexander Stoyakin ccb216a3ed
Fixing issues from Sonar report (#391)
* Fixing issues from Sonar report

* Proper logger of exceptions

* Coding style fixes

* Use dup parameter

* Cleanup, minor issues

* Cuda compilation fixed and some minor fixes
2020-04-23 08:36:49 +10:00
Alex Black 73aa760c0f
Timeouts and scala 2.12 for deeplearning4j-nlp-korean workaround (#380)
* Increase default timeout on Spark tests

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* #8840 disable deeplearning4j-nlp-korean module for scala 2.12

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* Fix for change-scala-versions.sh

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* CUDA test fixes + more timeout issues

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* More CUDA

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* Small fix for cuDNN subsampling + same mode

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* Flaky test fix

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* Reduce memory requirements for ValidateCuDNN BN test

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* Fix slow/ineffirient scalnet tests

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* Increase timeouts to avoid failures if CI machines are slower than expected

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* Ignore flaky test (issue #8849) and increase timeout for slow CI downloads

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2020-04-20 10:26:00 +10:00
Alex Black 63c9223bc2
Assorted fixes (#318)
* #8777 MultiLayerNetwork.evaluate(MultiDataSetIterator) overload

Signed-off-by: Alex Black <blacka101@gmail.com>

* #8768 SameDiff.equals

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* #8750 shade freemarker library and switch to it in DL4J UI

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* #8704 DL4J UI redirect

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* #8776 RecordReaderDataSetIterator builder collectMetaData fix

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* #8718 Fix DL4J doEvaluation metadata

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* #8715 ArchiveUtils - Add option to not log every extracted file

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* No exception for evaluations that don't support metadata

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* Fixes

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* #8765 CompGraph+MDS fix for SharedTrainingMaster

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* small fix

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* Timeout

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* Ignore

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* Revert freemarker shading

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* Ignore

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2020-03-27 00:33:13 +11:00
Alexander Stoyakin 8c0e378ec3
Improving SameDiff tests coverage (#227)
* Gradients tests added

* Fix for Standard deviation serialization + test

Signed-off-by: Alex Black <blacka101@gmail.com>

* More fixes

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* Test fixed

* Spark config driver host config for CI

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* Op validation timeout increase

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* Gradient check - fix for low probability test failure due to randomly all 0s mask

Signed-off-by: AlexDBlack <blacka101@gmail.com>

Co-authored-by: Alex Black <blacka101@gmail.com>
2020-02-13 10:29:08 +11:00
Alex Black 0756e3fe70
Small fixes. (#206)
* Logging format tweaks for file logging

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* Min abs error tweak for Util layer gradient checks

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* #8648 Fix SameDiff NPE instead of error for missing placeholders

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* Test runtime reduction

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2020-02-01 18:19:36 +11:00
Alex Black 29104083cc
Various fixes (#143)
* #8568 ArrayUtil optimization

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* #6171 Keras ReLU and ELU support

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* Keras softmax layer import

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* #8549 Webjars dependency management

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* Fix for TF import names ':0' suffix issue / NPE

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* BiasAdd: fix default data format for TF import

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* Update zoo test ignores

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* #8509 SameDiff Listener API - provide frame + iteration

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* #8520 ND4J Environment

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* Deconv3d

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* Deconv3d fixes + gradient check

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* Conv3d fixes + deconv3d DType test

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* Fix issue with deconv3d gradinet check weight init

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* #8579 Fix BaseCudaDataBuffer constructor fix for UINT16

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* DataType.isNumerical() returns false for BOOL type

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* #8504 Reduce Spark log spam for tests

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* Clean up DL4J gradient check test spam

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* More Gradient check spam reduction

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* SameDiff test spam reduction

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* Fixes for FlatBuffers mapping

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* SameDiff log spam cleanup

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* Tests should extend BaseNd4jTest

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* Remove debug line in c++ op

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* ND4J test spam cleanup

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* DL4J test spam reduction

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* More Dl4J and datavec test spam cleanup

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* Fix for bad conv3d test

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* Additional test

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* Embedding layers: don't inherit global default activation function

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* Trigger CI

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* Consolidate all BaseDL4JTest classes to single class used everywhere; make timeout configurable per class

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* Test fixes and timeout increases

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* Timeouts and PReLU fixes

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* Restore libnd4j build threads arg for CUDA build

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* Increase timeouts on a few tests to avoid spurious failures on some CI machines

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* More timeout fixes

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* More test timeout fixes

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* Tweak timeout for one more test

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* Final tweaks

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* One more ignore

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2020-01-04 13:45:07 +11:00
Samuel Audet 5e07998e59 Add support for CUDA 10.2 (#89) 2019-11-29 16:31:03 +11:00
Alex Black 6f514e9431
DL4J UI: Migrate from Play to Vertx (#68)
* Vertx transition initial steps

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* Assets serving works

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* Next steps

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* Add other pages

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* Add remaining modules

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* Delete deeplearning4j-play module

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* SD UI module

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* Main UI works

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* Multi-session UI fixed

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* TSNE fixed

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* Polish, fixes, re-add CLI launch option

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* Fix remote UI functionality

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* Final tweaks

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* Remove Scala version suffix from deeplearning4j-ui

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* Update Arbiter UI to vertx

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* Missing version tag

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* Remove (now unneeded) scala from arbiter UI

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* Move vertx version to parent pom

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* Switch template loading from classpath to a more reliable mechanism

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* Small fix for I18N message loading

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* Switch to shaded jackson for UI module JSON conversion

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* Small test tweaks and copyright header fix

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* pom file copyright headers

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* plugins -> pliginManagement for java 8 modules

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* plugins -> pliginManagement for java 8 modules

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2019-11-22 23:50:34 +11:00
raver119 7abc574eeb
Snapshot update (#8194)
* fix double consumption of rng on cpu

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* Shyrma docs (#222)

* - documenting and profiling matrix_set_diag cuda kernel

Signed-off-by: Yurii <yurii@skymind.io>

* - correct formula of pnorm pooling in cuda 2d/3d kernels
- remove helper matrix_diag which duplicates work of helper matrix_set_diag

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* cublasHandle sharing + lock

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* cublasHandle sharing + lock

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* Documentation from serialization/deserialization in NLP (#221)

* refactoring

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* Javadocs

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* Javadoc fixed

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* Cleanup

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* dedicated lock for getCudaCublasHandle

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* Small fixes (#223)

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* ELU DL4J fixes (#224)

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* javadoc (#225)

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* Small test compilation fix (#226)

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* #8182 remove spark version suffix (#227)

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* [WIP] Thread safety (#229)

* sync after cublas*gemm

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* mutex for CublasHelper

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* don't store cublasHandle in LaunchContext, it's per-device anyway

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* some printout

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* check for field instead

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* pew-pew

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* don't release ContextBuffers until device changed

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* small tweak

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* some logging in sgemm

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* stream sync

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* some more logging

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* some more error checks

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* one fancy test

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* one fancy test

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* minor AffinityManager fix

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* cudaEvent error logging improvement

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* ConstantHelper thread safety

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* - minor corrections in ConstantTadHelper

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* ConstantShapeHelper thread safety

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* ConstantTadHelper.cu updated

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* logging off

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* logging off

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2019-09-03 22:02:02 +03:00
Alex Black dcc2baa676
Version upgrades (#199)
* DataVec fixes for Jackson version upgrade

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* DL4J jackson updates + databind version 2.9.9.3

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* Shade snakeyaml along with jackson

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* Version fix

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* Switch DataVec legacy JSON format handling to mixins

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* Next set of fixes

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Cleanup for legacy JSON mapping

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Upgrade commons compress to 1.18; small test fix

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* New Jackson backward compatibility for DL4J - Round 1

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* New Jackson backward compatibility for DL4J - Round 2

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* More fixes, all but legacy custom passing

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Provide an upgrade path for custom layers for models in pre-1.0.0-beta JSON format

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Legacy deserialization cleanup

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Small amount of polish - legacy JSON

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Upgrade guava version

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* IEvaluation legacy format deserialization fix

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Upgrade play version to 2.7.3

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Update nd4j-parameter-server-status to new Play API

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Update DL4J UI for new play version

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* More play framework updates

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Small fixes

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Remove Spark 1/2 adapter code from DataVec

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* datavec-spark dependency cleanup

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* DL4J spark updates, pt 1

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* DL4J spark updates, pt 2

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* DL4J spark updates, pt 3

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* DL4J spark updates, pt 4

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Test fix

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Another fix

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Breeze upgrade, dependency cleanup

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Add Scala 2.12 version to pom.xml

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* change-scala-versions.sh - add scala 2.12, remove 2.10

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Move Spark version properties to parent pom (now that only one spark version is supported)

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* DataVec Play fixes

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* datavec play dependency fixes

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Clean up old spark/jackson stuff

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Cleanup jackson unused dependencies

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Dropping redundant dependency

Signed-off-by: Alexander Stoyakin <alexander.stoyakin@gmail.com>

* Removed scalaxy dependency

Signed-off-by: Alexander Stoyakin <alexander.stoyakin@gmail.com>

* DataVec fixes for Jackson version upgrade

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* DL4J jackson updates + databind version 2.9.9.3

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Shade snakeyaml along with jackson

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Version fix

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Switch DataVec legacy JSON format handling to mixins

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Next set of fixes

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Cleanup for legacy JSON mapping

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Upgrade commons compress to 1.18; small test fix

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* New Jackson backward compatibility for DL4J - Round 1

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* New Jackson backward compatibility for DL4J - Round 2

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* More fixes, all but legacy custom passing

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Provide an upgrade path for custom layers for models in pre-1.0.0-beta JSON format

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Legacy deserialization cleanup

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Small amount of polish - legacy JSON

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Upgrade guava version

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* IEvaluation legacy format deserialization fix

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Upgrade play version to 2.7.3

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Update nd4j-parameter-server-status to new Play API

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Update DL4J UI for new play version

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* More play framework updates

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Small fixes

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Remove Spark 1/2 adapter code from DataVec

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* datavec-spark dependency cleanup

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* DL4J spark updates, pt 1

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* DL4J spark updates, pt 2

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* DL4J spark updates, pt 3

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* DL4J spark updates, pt 4

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Test fix

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Another fix

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Breeze upgrade, dependency cleanup

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Add Scala 2.12 version to pom.xml

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* change-scala-versions.sh - add scala 2.12, remove 2.10

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Move Spark version properties to parent pom (now that only one spark version is supported)

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* DataVec Play fixes

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* datavec play dependency fixes

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Clean up old spark/jackson stuff

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Cleanup jackson unused dependencies

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Add shaded guava

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Dropping redundant dependency

Signed-off-by: Alexander Stoyakin <alexander.stoyakin@gmail.com>

* Removed scalaxy dependency

Signed-off-by: Alexander Stoyakin <alexander.stoyakin@gmail.com>

* Ensure not possible to import pre-shaded classes, and remove direct guava dependencies in favor of shaded

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* ND4J Shaded guava import fixes

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* DataVec and DL4J guava shading

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Arbiter, RL4J fixes

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Build fixed

Signed-off-by: Alexander Stoyakin <alexander.stoyakin@gmail.com>

* Fix dependency

Signed-off-by: Alexander Stoyakin <alexander.stoyakin@gmail.com>

* Fix bad merge

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Jackson shading fixes

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Set play secret, datavec-spark-inference-server

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Fix for datavec-spark-inference-server

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Arbiter fixes

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Arbiter fixes

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Small test fix

Signed-off-by: AlexDBlack <blacka101@gmail.com>
2019-08-30 14:35:27 +10:00
Alex Black 95100ffd8c
Small build fixes (#127)
* Small build fixes

Signed-off-by: Alex Black <blacka101@gmail.com>

* Fix RL4J

Signed-off-by: Alex Black <blacka101@gmail.com>

* Test fixes

Signed-off-by: Alex Black <blacka101@gmail.com>

* Another fix

Signed-off-by: Alex Black <blacka101@gmail.com>
2019-08-17 14:13:31 +10:00
skymindops b5f0ec072f Eclipse Migration Initial Commit 2019-06-06 15:21:15 +03:00