Commit Graph

191 Commits (83cb1a2326a6e7b4a46a58d48c60e37d2cbb4dc6)

Author SHA1 Message Date
raver119 78260efe54 fix overallocation for memory-mapped workspaces
Signed-off-by: raver119 <raver119@gmail.com>
2020-04-22 12:38:22 +03:00
raver119 5ee37a22eb
Workspace ID fix (#400)
Signed-off-by: raver119 <raver119@gmail.com>
2020-04-21 07:31:57 +03:00
Alex Black fe516ae6cf
nd4j-jackson dependency fix (#398)
* Remove old nd4j-jackson dependencies

Signed-off-by: Alex Black <blacka101@gmail.com>

* Fix use of old/deprecated JSON serializer

Signed-off-by: Alex Black <blacka101@gmail.com>

* Fix deserialization

Signed-off-by: Alex Black <blacka101@gmail.com>

* Delete test using deleted ser/de classes

Signed-off-by: Alex Black <blacka101@gmail.com>

* Delete another copy of old test

Signed-off-by: Alex Black <blacka101@gmail.com>
2020-04-20 22:33:11 +10:00
Alex Black 191bda3228
Base namespace (#287)
* wip

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* up to assign operation.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* fix Imax, IMin.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* concat.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* dynamicPartition

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* new ops up to gte.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* wip

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* updated review items.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* up to matchCondition.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* wip

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* up to OneHot.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* wip. up to permute.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* wip. up to rank.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* wip. up to scatterMul.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* resolving code review issues.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* wip. inclides UnsortedSegment ops.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* wip. up to stridedSlice.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* fix stridedSlice.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* first pass of SDBaseops.kt complete.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* fix review items.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* wip

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* put branch in compilable state.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* add NDBaseTest. fix dynamicPartition signature. failed fix of assign.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* make tests public.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* adds tests up to invertedPermutation.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* fix ScalarEquals, Assign.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* wip

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* updates NDBaseTest.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* updates 'check' comments based on test pass/fail.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* fix scalar ops. Update tests,

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* dev-tools review items. wip.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* dev-tools code review items.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* Test fixes

Signed-off-by: Alex Black <blacka101@gmail.com>

* complete review items.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* Comment for logged issue; fix test case

Signed-off-by: Alex Black <blacka101@gmail.com>

* Fixes

Signed-off-by: Alex Black <blacka101@gmail.com>

* More fixes

* wip

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* undo changes to Nd4jCpu.java

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* update tests.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* Fixes and regenerate

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Small test fixes

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* small fixes to tests.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* Cleanup

Signed-off-by: Alex Black <blacka101@gmail.com>

* Fixes

Signed-off-by: Alex Black <blacka101@gmail.com>

* Small CUDAExecutioner fix

Signed-off-by: Alex Black <blacka101@gmail.com>

* Fixes

Signed-off-by: Alex Black <blacka101@gmail.com>

* Small CudaExecutioner fix

Signed-off-by: Alex Black <blacka101@gmail.com>

* Another small CudaExecutioner fix

Signed-off-by: Alex Black <blacka101@gmail.com>

* Another small CudaExecutioner fix

Signed-off-by: Alex Black <blacka101@gmail.com>

Co-authored-by: Robert Altena <Rob@Ra-ai.com>
2020-04-20 16:57:00 +10:00
Oleh 3d15706ffa
Lin_space operation improve (#373)
* libnd4j update linspace op

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j #8513 update lin_space op, tests added

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* - minor linspace tweaks (num_elements now iArg)
- java linspace updates
- couple of additional tests for linspace

Signed-off-by: raver119 <raver119@gmail.com>

* roll back timeout change

Signed-off-by: raver119 <raver119@gmail.com>

Co-authored-by: raver119 <raver119@gmail.com>
2020-04-16 14:53:56 +03:00
raver119 12ba1fa406
Few minor fixes (#381)
* - 1D indexing fix
- couple of new tests for 1D indexing

Signed-off-by: raver119 <raver119@gmail.com>

* percentile fix + test

Signed-off-by: raver119 <raver119@gmail.com>

* wrong signature used in test

Signed-off-by: raver119 <raver119@gmail.com>
2020-04-16 13:25:13 +03:00
raver119 75af392671
- memcpy fix + validation for CUDA: skip memcpu if length < 1 (#375)
- Reset cached context after device affinity change

Signed-off-by: raver119 <raver119@gmail.com>
2020-04-14 18:47:46 +03:00
Samuel Audet 6fcd078c5e
Update dependencies to just released JavaCPP and JavaCV 1.5.3 (#374)
Signed-off-by: Samuel Audet <samuel.audet@gmail.com>
2020-04-14 19:36:14 +10:00
Alex Black 99c727f15b
Add javacpp classifier dependency to nd4j-native and nd4j-cuda (#366)
Signed-off-by: Alex Black <blacka101@gmail.com>
2020-04-09 10:00:27 +10:00
Andrii T d86dd5b131
DL4J and SameDiff integration tests + LSTMLayer java op class (#353)
* init in this branch

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* Lenetet Mnist workflow

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* small fix for calculations

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* for Alex to check placeholder null pointer issue

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* CNN3D workflow

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* state for launching on dxg to regenterate dl4j examples

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* SD RNN test case workflow

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* small fixes

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* checkpoint at lstmBlock: Input array 1 (x) rank must be got input with rank 2 issue

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* Fix LSTMLayer inputs order

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* lstm mismatch with c++ op issue

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* LSTMLayer config draft

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* LSTMLayer config draft v2

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* have doubt I had to do this

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* NDRNN generated by codegen

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* LSTMLayerTestCases draft

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* minor fixes again

* added LSTMLayer testcases to nd4j-tests + setted Preconditions in LSTMLayer constructors

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* added lost SDCNNtestcases

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* overrided getNumOutputs from DynamicCustomOp in LSTMLayer and reorganized LSTMLayerOutputs according to cpp op

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* finished with LSTMLayerOutputs

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* Fix MKLDNN platform checks (i.e., when MKLDNN can be used vs. not)

Signed-off-by: Alex Black <blacka101@gmail.com>

* Fix LSTMLayerWeights input order

Signed-off-by: Alex Black <blacka101@gmail.com>

* More fixes

Signed-off-by: Alex Black <blacka101@gmail.com>

* minor fixes

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* fixed LSTMLayer testcases

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* finished SameDiffRNNTestCase

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* finished all testcases + minor fixes

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* Multiple generation-related fixes

Signed-off-by: Alex Black <blacka101@gmail.com>

* Fix multiple issues

Signed-off-by: Alex Black <blacka101@gmail.com>

* More fixes

Signed-off-by: Alex Black <blacka101@gmail.com>

* LSTM fixes

Signed-off-by: Alex Black <blacka101@gmail.com>

* Regenerate ND4J namespaces and fix multiple issues

Signed-off-by: Alex Black <blacka101@gmail.com>

* changed SameDiffRNNTestCase

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* Small fix

Signed-off-by: Alex Black <blacka101@gmail.com>

* added  Nd4j.getRandom().setSeed(12345) where needed

Signed-off-by: Andrii Tuzhykov <andrewtuzhykov@gmail.com>

* #8828 Fix ND4J profiler NaN/Inf checks when using OpContext

Signed-off-by: Alex Black <blacka101@gmail.com>

* #8828 Fix ND4J profiler NaN/Inf checks when using OpContext

Signed-off-by: Alex Black <blacka101@gmail.com>

* Tweak to weight init for SameDiff CNN test case

Signed-off-by: Alex Black <blacka101@gmail.com>

* Tweaks for test cases

Signed-off-by: Alex Black <blacka101@gmail.com>

* Ignore failing tests until fixed

Signed-off-by: Alex Black <blacka101@gmail.com>

* Fix

Signed-off-by: Alex Black <blacka101@gmail.com>

Co-authored-by: Alex Black <blacka101@gmail.com>
2020-04-09 00:20:48 +10:00
raver119 04b2b4f9b6
Few fixes (#361)
* INDArray.close() fix for CPU

Signed-off-by: raver119 <raver119@gmail.com>

* - BroadcastableBoolOp introduced
- ConfusionMatrix now supports explicit DataType argument

Signed-off-by: raver119 <raver119@gmail.com>

* confusion_matrix: dtype is still optional

Signed-off-by: raver119 <raver119@gmail.com>

* disable bert tests in debug builds

Signed-off-by: raver119 <raver119@gmail.com>

* Affinity fix

Signed-off-by: raver119 <raver119@gmail.com>

* minor workspace tweak to allow close() on scoped out borrowed workspace

Signed-off-by: raver119 <raver119@gmail.com>
2020-04-06 21:01:59 +03:00
mheck136 364f9a660c
Set source and target version of nd4j-native to java 7 (#8808)
Signed-off-by: Martin Heck <mheck136@gmail.com>
2020-03-26 11:33:56 +11:00
Serhii Shepel 3cbba49518
Bugfix failing builds (#341)
* Fix interpreter for libnd4j tests and drop test script

* Remove mingw when specifying javacpp.platform, add new profile that triggers when javacpp.platform is windows-x86_64

* Update android 32 bit toolchain for x86

* Try triple instead of -target

* Change to -target

* Update 32 bit arm

* Change android bin path

* Update arm 32 bit build again

Co-authored-by: Adam Gibson <1144306+agibsonccc@users.noreply.github.com>
2020-03-24 12:55:47 +11:00
Oleh 69c92ca5ae
Learning updaters for gradient (#335)
* libnd4j raw implementation of sgd upader

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j some corrections and simple test added

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j some corrections after discussion

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j integrate applyScalar

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j raw implementation of rmsPropUpdater on cpu

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j fix operations declaration

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j rmsPropUpdater added, test cases for sgd, etc

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j fixed several typos

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j some fixes and improvements for rmsPropUpdater based on Java tests

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j fixed cuda implementation, update tests and corrected behavior according java tests

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j adaGrad updater added

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j one minor fix for ada grad

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j several more fixes for ada_grad

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j nesterovs updater added

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j fixed nesterovs updater behavior, several typos and rename file

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j one minor typo

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j ada max updater added

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j fixed several typos in adaMax updater

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j fixed several typos in adaMaxUpdater

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j several fixes for adaMax, added Adam Updater

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j adaDeltaUpdater added, minor fixes for adamUpdater

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j several fixes for adaDeltaUpdater

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j nadamUpdater added

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j one more correction for nadam updater

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j several fixes for nadam updater and added amsGradUpdater

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j several typos fixed in amsGradUpdater

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j some corrections and added f order support rmsProp updater

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j added support of f order for all updaters and modify tests for testing in place

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j fixed issues for updates when not in place mode used, added tests for f order

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j added input shape checks

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j some corrections for different cases handling

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j some code clean up and optimize per request

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j updaters refactoring after review

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* SgdUpdater wrapper

Signed-off-by: raver119 <raver119@gmail.com>

* first test

Signed-off-by: raver119 <raver119@gmail.com>

* RmsPropUpdater added

Signed-off-by: raver119 <raver119@gmail.com>

* NadamUpdater + NesterovsUpdater

Signed-off-by: raver119 <raver119@gmail.com>

* AmsGradUpdater

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* AdamUpdater added

Signed-off-by: raver119 <raver119@gmail.com>

* AdaGradUpdater + AdaDeltaUpdater + AdaMaxUpdater

Signed-off-by: raver119 <raver119@gmail.com>

* AdaGradUpdater test added

Signed-off-by: raver119 <raver119@gmail.com>

* libnd4j remove input parameters parsing through NDArray, split implementation of helpers to separate files, added some rename, etc

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j next step to split operations implementation into separate files

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j merge master and minor corrections

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j revert some changes of split implementation

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* libnd4j forgot to add header file

Signed-off-by: Oleg <oleg.semeniv@gmail.com>

* public default constructors

Signed-off-by: raver119 <raver119@gmail.com>

* ImportClassMapping updated

Signed-off-by: raver119 <raver119@gmail.com>

Co-authored-by: raver119 <raver119@gmail.com>
2020-03-23 07:28:31 +03:00
Adam Gibson 015147b713
Fix openblas linking issues (#340)
* Fix cmake detection in msys

* Revert windows change

* Update to unix line endings

* Fix linking issues
2020-03-21 17:30:26 +09:00
Alex Black f79207033b
SameDiff multi-threaded inference (#263)
* #8682 Don't log openmp BLAS threads for CUDA

Signed-off-by: Alex Black <blacka101@gmail.com>

* #8654 Add SameDiff multi-threaded tests

Signed-off-by: Alex Black <blacka101@gmail.com>

* Switching to op context for SameDiff exec

Signed-off-by: Alex Black <blacka101@gmail.com>

* Next steps

Signed-off-by: Alex Black <blacka101@gmail.com>

* Most back to passing

Signed-off-by: Alex Black <blacka101@gmail.com>

* Fixes

Signed-off-by: Alex Black <blacka101@gmail.com>

* Better tests, test refactoring

Signed-off-by: Alex Black <blacka101@gmail.com>

* Small tweak

Signed-off-by: Alex Black <blacka101@gmail.com>

* Code duplication reduction

Signed-off-by: Alex Black <blacka101@gmail.com>

* More code deduplication

Signed-off-by: Alex Black <blacka101@gmail.com>

* CUDA fixes

Signed-off-by: Alex Black <blacka101@gmail.com>

* More CUDA fixes

Signed-off-by: Alex Black <blacka101@gmail.com>

* More fixes

Signed-off-by: Alex Black <blacka101@gmail.com>

* Small fix

Signed-off-by: Alex Black <blacka101@gmail.com>

* ND4S small fixes

Signed-off-by: Alex Black <blacka101@gmail.com>
2020-03-20 21:24:39 +11:00
raver119 7a2ac800dd
Nullify (#304)
* initial commit

Signed-off-by: raver119 <raver119@gmail.com>

* bunch of tweaks

Signed-off-by: raver119 <raver119@gmail.com>

* hamming distance nullification

Signed-off-by: raver119 <raver119@gmail.com>

* Add output array value assignment for testing/debugging

Signed-off-by: Alex Black <blacka101@gmail.com>

* don't assign empty arrays

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* conv2d/conv3d/depthwise2d nullified

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* conv2d/conv3d/depthwise2d nullified

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* conv2d/conv3d/depthwise2d nullified

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* few more fixes

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* im2col

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* pooling?

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* more nullified

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* ismax nullified

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* rollback ismax nullification

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* synchronized cublas handle use on per-device basis

Signed-off-by: raver119 <raver119@gmail.com>

* hiding method from jcpp

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* get rid of test assigns in DeclarableOp

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* get rid of assigns

Signed-off-by: raver119 <raver119@gmail.com>

* proper deviceId is back

Signed-off-by: raver119 <raver119@gmail.com>

* include fixed

Signed-off-by: raver119 <raver119@gmail.com>

Co-authored-by: Alex Black <blacka101@gmail.com>
2020-03-20 08:49:28 +03:00
Adam Gibson 30a28fae45
Windows fix (#333)
* Fix cmake detection in msys

* Revert windows change

* Update to unix line endings
2020-03-20 12:14:03 +09:00
Adam Gibson 0cf4a45573
Fixes #8763 (#310)
* Fix cmake detection in msys

* Fix toolchain file on windows

* Make android 64 bit work

* Fix libnd4j build script on msys

* Update build script for windows/linux

* Encoding issue for ci

* Update pom.xml

* Update pom.xml

* Update pom.xml

* Remove mingw

* Ensure android x86 builds are inline with arm builds

* Update toolchains and env variables for x86

* Move profile for build program up to parent

* Fix blas vendor and add comment

* Update cuda presets version

* Set default value and move properties back to child pom

* Change program from hard coded to use the script as the program

* Update pom.xml

* Update pom.xml

* Static lib fix

* Update static lib output

* Get rid of old comments

* Update static for buiding
2020-03-19 14:53:21 +09:00
Shams Ul Azeem 9c77bfa85f
Support for more numpy datatypes (#241)
* Adding more datatypes support in datavec-python

* Using numpy C API for creating numpy arrays

* Adding parameterized tests

* Adding support for BFLOAT16 (by converting it to FLOAT)

* Cleanup

* Using casting instead of creating an array

* Giving out a warning while casting array from BFLOAT16 to FLOAT

* Add syncToPrimary and syncToSpecial methods to BaseDataBuffer

Signed-off-by: Alex Black <blacka101@gmail.com>

* Python exec: sync to host before passing pointers

Signed-off-by: Alex Black <blacka101@gmail.com>

* Added copyright header

* use np api (#267)

* python exec / numpy - check object type before cast (#268)

* use np api

* verify object before cast

* fix cong

* cuda fix

* inplace test + tiny fix

* more test

* fix double alloc

* rem tags

* fix cuda check

* Fix implicit CUDA dependency in datavec-python tests; remove new method, add test

Signed-off-by: Alex Black <blacka101@gmail.com>

Co-authored-by: Alex Black <blacka101@gmail.com>
Co-authored-by: Fariz Rahman <farizrahman4u@gmail.com>
2020-03-19 00:48:37 +11:00
raver119 bac130bd78
CUDA host pointer fix (#322)
* CUDA fix: host pointer propagation

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* disable logging

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2020-03-16 12:07:34 +03:00
Yurii Shyrma e42b4e96c3
correct output empty shapes deducing in split op (#311)
* - correct output empty shapes deducing in split op

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* java test fixed

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* - split broadcast::exec function on individual functions corresponding to switch arg

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* - split broadcast::exec _int and _bool function on individual functions corresponding to switch arg

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2020-03-12 18:25:54 +03:00
Alex Black a80fb99a5f
DL4J integrations tests updates + add SameDiff support (#298)
* Revive and start updating DL4J integration tests

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* Add SameDiff support - first pass

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* SameDiff test case generation

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* SameDiff integration tests polishing

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* More SameDiff integration test fixes

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* Final polish

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* Small test tweak

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2020-03-07 22:44:41 +11:00
Samuel Audet 1c89512ec0
Add Maven profiles for ARM builds to pom.xml files (#265)
* Add Maven profiles for ARM builds to pom.xml files

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* Remove mkl from dependencies when running on non intel/amd platforms

* Downgrade openblas for now

* Change back to 0.3.8

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2020-03-04 11:11:01 +03:00
raver119 63fa3c2ef3
libnd4j polishing (#273)
* initial set of include changes

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* one more tweak

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* few more rearrangements

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* few more rearrangements

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* few more rearrangements

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* cuda includes rearrangements

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* java update

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* = namespace changed to sd
- few CMake variables renamed with SD_ prefix

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* java update

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* LoopKind minor fix

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* few more changes

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* few more changes

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* few more changes

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* sanitizer is optional now

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* dev tests updated

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* few more changes

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* last update

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* java update

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2020-03-02 12:49:41 +03:00
Yurii Shyrma f7a9190407
profiling of concat op (both cuda and cpu) (#151)
* - profiling of concat op (both cuda and cpu)

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* better comparison for large concat

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* - further improving of concat op

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* some loggin

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* - add possibility to verify presence of trailing unities in shape and set strides/ews correspondingly
- restrict second simple case in concat op to c order only

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* - move concat op to specials_single.cpp file

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* - get rid of second concat op declaration in transforms.cpp file

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2020-02-20 21:19:01 +03:00
raver119 9e3c1b02b1
Perf improvements (#242)
* initial commit

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* meh

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* better ExpandDims impl

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* better Squeeze impl

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* better Softmax impl

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* one test disabled

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* more accurate impl

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* - GraphProfiler now prints full shapeInfo instead of shape
- softmax typo fix

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2020-02-14 16:20:31 +03:00
raver119 1dfac9a736
DataBuffer.write() tweak (#221)
* special workaround methods for DataBuffer.write

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* one test removed

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* more of unsynced

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* missing asLong for BaseCudaDataBuffer

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2020-02-07 18:16:11 +03:00
raver119 a0da5a9e47
Events removed from Java (#219)
* replace mutex with lock_guards

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* Events ditched from Java CUDA logic

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2020-02-07 12:34:55 +03:00
Alex Black 569a46f87d
Fixes (#213)
* Increase timeouts for 2 tests occasionally failing on CI

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* Explicitly set character encoding via argline for maven surefire tests

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* CUDA gradient check timeout fix + simple rnn masking fix

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2020-02-05 17:07:36 +11:00
raver119 5d28e6143d
OpContext handling (#214)
* nano tweaks

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* OpContext tweaks

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* OpContext deallocators

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* get rid of few mkldnn safety checks

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* databuffer setSpecial fix

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2020-02-05 07:27:24 +03:00
raver119 81efa5c3b6
[WIP] one small fix (#207)
* one small fix

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* assert added

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2020-02-02 19:17:26 +03:00
Alex Black 0756e3fe70
Small fixes. (#206)
* Logging format tweaks for file logging

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* Min abs error tweak for Util layer gradient checks

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* #8648 Fix SameDiff NPE instead of error for missing placeholders

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* Test runtime reduction

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2020-02-01 18:19:36 +11:00
raver119 5d98cfcf47
Configurable DataType for ops (#201)
* initial commit

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* - one more test for OneHot with dtype
- one more signature in Nd4j

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* ones_as/zeros_as now accept dtype

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* one more test

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* - more updates for configurable data types
- ones_as/zeros_as java side + tests

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* few c++ tests fixed

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* few more changes around DArgs

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2020-01-30 18:46:12 +03:00
raver119 ba961c7601
DataTypes & FlatBuffers (#197)
* flatbuffers version upgrade

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* flatbuffers version upgrade java side

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* flatbuffers dependency version upgrade java side

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* MKLDNN version upgrade

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* DArgs first pass

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* signatures first pass

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* signatures second pass

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* signatures third pass

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* signatures third pass

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* signatures fourth pass

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* signatures fifth pass

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* flatbuffers UI version upgrade java side

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* flatbuffers ui update

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* flatbuffers downgrade

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* flatbuffers downgrade java side

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2020-01-30 10:07:24 +03:00
raver119 9f719488b9
CUDA sync tweaks (#194)
* ThreadLocal cache for CudaContext

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* temp commit

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* remove unwanted synchronization

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2020-01-28 10:55:06 +03:00
raver119 7ef0ef907e
Packages fix (#193)
* packages fix

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* few imports fixed

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* few imports fixed

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2020-01-27 23:04:21 +03:00
raver119 531a72fabd
execution mode (#183)
* initial commit

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* execution mode java side

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* meh

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* move exec mode to ContextPrototype

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* copyrights

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2020-01-27 10:00:07 +03:00
Alexander Stoyakin 4db28a9300 Cleanup of multiple projects (#175)
* Cleanup modules

* Moving subprojects to nd4j-api

* Project cleanup

* Dropped AWS sub-project

* dl4j-util moved to core

* dl4j-perf moved to core

* Tests coverage

* Revert "Moving subprojects to nd4j-api"

This reverts commit bc6eb573c6b60c407ade47172c5d204725077e6b.

* Moved nd4j-buffer and nd4j-context to nd4j-api

* Rolled back change

* Revert "Project cleanup"

This reverts commit 64ac7f369b2d968f7be437718034f093fc886ffc.

* Datavec cleaned up

* Revert "Moved nd4j-buffer and nd4j-context to nd4j-api"

This reverts commit 75f4e8da80d2551e44e1251dd6c5923289fff8e1.

# Conflicts:
#	nd4j/nd4j-backends/nd4j-tests/src/test/java/org/nd4j/autodiff/opvalidation/ReductionBpOpValidation.java

* Resolve conflict

* Compilation fixed.

* nd4j-context and nd4j-buffer moved to nd4j-api

* Fixed TF mapping for mmul

* Fix for dl4j-cuda tests

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* Move last few tests from deeplearning4j-nn to -core

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* Remove incorrect TF import mapping for TensorMmul op

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* Cleaned TF mapping

* Fix path for test results on windows

* Remove old dependency

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* One more attempt to fix path for test results on windows

* fixup! One more attempt to fix path for test results on windows

* fixup! One more attempt to fix path for test results on windows

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Co-authored-by: Serhii Shepel <9946053+sshepel@users.noreply.github.com>
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2020-01-24 22:35:00 +03:00
raver119 5d69069177
[WIP] Memory limits (#167)
* initial commit

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* one more initial commit

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* additional initial commit

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* subsequent initial commit

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* initial commit testing

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* initial commit per device

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* initial commit per group

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* initial commit for cuda

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* initial commit for cuda + few missed lines

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* initial commit for cuda + missed includes

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* initial commit for cuda + one more missed include

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* initial commit shouldn't count host mem as dev0 in cuda

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* initial commit that tracks HOST group limits for CUDA

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* initial commit with some Environment changes

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* initial commit with more Environment changes

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* initial commit with maxMasterThreads fix

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* initial commit with maxMasterThreads fix

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* initial commit without maxMasterThreads exception

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* initial commit without Nd4jULong in Environment

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* add sleep and more iterations for OOM cases

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* limits propagation from java side

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* - consume ErrorCode every time
- one test for memory limits

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* unordered_map

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* unordered_map

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* unordered_map

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* RSub op mapping fixed

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* typo fixed

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* one bad test fixed

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2020-01-24 10:11:09 +03:00
raver119 256c9d20b0
alloc check for RNG (#179)
* missing alloc validation in RandomGenerator for CUDA

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* set error message if rng alloc failed

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* check for error code during RNG creation in java

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2020-01-23 09:51:02 +03:00
raver119 25db3a44f1
[WIP] few fixes for tests (#177)
* nd4j-aeron profiles

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* nd4j-aeron profiles

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* skip one long test

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* skip one long test

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* kryo profile

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* few more profiles

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* few more profiles

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* few more profiles

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2020-01-22 16:12:30 +03:00
Alex Black a25bb6a11c
Unit/integration test split + test speedup (#166)
* Add maven profile + base tests methods for integration tests

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* Switch from system property to environment variable; seems more reliable in intellij

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* Add nd4j-common-tests module, and common base test; cleanup

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* Ensure all ND4J tests extend BaseND4JTest

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* Test spam reduction, import fix

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* Add test logging to nd4j-aeron

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* Fix unintended change

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* Reduce sprint test log spam

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* More test spam cleanup

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* Significantly speed up TSNE tests

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* W2V iterator test unit/integration split

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* More NLP test speedups

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* Avoid debug/verbose mode leaking between tests

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* test tweak

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* Arbiter extends base DL4J test

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* Arbiter test speedup

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* nlp-uima test speedup

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* More test speedups

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* Fix ND4J base test

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* Few small ND4J test speed improvements

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* DL4J tests speedup

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* More tweaks

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* Even more test speedups

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* More tweaks

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* Various test fixes

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* More test fixes

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* Add ability to specify number of threads for C++ ops in BaseDL4JTest and BaseND4JTest

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* nd4j-aeron test profile fix for CUDA

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2020-01-22 22:27:01 +11:00
raver119 7783012f39
cuDNN integration (#150)
* initial commit

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* one file

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* few more includes

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* m?

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* const

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* cudnn linkage in tests

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* culibos

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* static reminder

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* platform engine tag

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* HAVE_CUDNN moved to config.h.in

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* include

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* include

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* skip cudnn handle creation if there's not cudnn

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* meh

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* target device in context

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* platform engines

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* platform engines

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* allow multiple -h args

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* allow multiple -h args

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* move mkldnn out of CPU block

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* link to mkldnn on cuda

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* less prints

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* minor tweaks

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* next step

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* conv2d NCHW draft

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* conv2d biasAdd

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* test for MKL/CUDNN combined use

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* - provide additional code for conv2d ff based on cudnn api, not tested yet

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* - further work on conv2d helper based on using cudnn api

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* - fixing several cuda bugs which appeared after cudnn lib had been started to use

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* - implementation of conv2d backprop op based on cudnn api

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* - implementaion of conv3d and conv3d_bp ops based on cudnn api

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* - bugs fixing in conv3d/conv3d_bp ops (cudnn in use)

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* - implementation of depthwiseConv2d (ff/bp) op based on cudnn api

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* - implementation of batchnorm ff op based on cudnn api

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* - disable cudnn batchnorm temporary

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* - add minor change in cmake

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* engine for depthwise mkldnn

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* couple of includes

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* - provide permutation to cudnn batchnorm ff when format is NHWC

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* lgamma fix

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* - eliminate memory leak in two tests

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2020-01-20 21:32:46 +03:00
raver119 29e8e09db6
String changes (#3)
* initial commit

* additional data types & tensor type

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* next step

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* missing include

* sparse_to_dense

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* few more tests files

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* draft

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* numeric sparse_to_dense

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* comment

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* string sparse_to_dense version

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* CUDA DataBuffer expand

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* few tweaks for CUDA build

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* shape fn for string_split

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* one more comment

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* string_split indices

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* next step

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* test passes

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* few rearrangements for databuffer implementations

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* DataBuffer: move inline methods to common implementations

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* add native DataBuffer to Nd4j presets

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* DataBuffer creation

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* use DataBuffer for allocation

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* cpu databuffer as deallocatable

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* DataBuffer setters for bufers

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* couple of wrappers

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* DataBuffers being passed around

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* Bunch of ByteBuffer-related signatures gone

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* - few more Nd4j signatures removed
- minor fix for bfloat16

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* nullptr pointer is still a pointer, but 0 as address :)

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* one special test

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* empty string array init

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* one more test in cpp

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* memcpy instead of databuffer swap

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* special InteropDataBuffer for front-end languages

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* few tweaks for java

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* pointer/indexer actualization

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* CustomOp returns list for inputArumgents and outputArguments instead of array

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* redundant call

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* print_variable op

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* - view handling (but wrong one)
- print_variable java wrapper

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* one more test

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* - empty arrays handling

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* - deserialization works now

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* minor fix

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* meh

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* one more fix

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* initial cuda commit

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* print_variable message validation

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* CUDA views

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* CUDA special buffer size

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* minor update to match master changes

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* - consider arrays always actual on device for CUDA
- additional PrintVariable constructor
- CudaUtf8Buffer now allocates host buffer by default

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* meh

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* - print_variable now allows print from device

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* InteropDataBuffer data type fix

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* ...

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* disable some debug messages

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* master pulled in

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* couple of new methods for DataBuffer interop

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* java side

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* offsetted constructor

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* new CUDA deallocator

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* CUDA backend torn apart

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* CUDA backend torn apart 2

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* CUDA backend torn apart 3

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* - few new tests
- few new methods for DataBuffer management

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* few more tests + few more tweaks

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* two failing tests

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* one more test

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* two failing tests pass

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* now we pass DataBuffer to legacy ops too

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* Native DataBuffer for legacy ops, Java side

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* CPU java side update

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* CUDA java side update

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* no more prepare/register action on java side

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* NDArray::prepare/register use now accepts vectors

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* InteropDataBuffer now has few more convenience methods

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* java bindings update

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* tick device in NativeOps

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* Corrected usage of OpaqueBuffer for tests.

* Corrected usage of OpaqueBuffer for java tests.

* NativeOpsTests fixes.

* print_variable now returns scalar

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* one more test

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* compat_string_split fix for CUDA

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* - CUDA execScalar fix
- CUDA lazyAllocateHostPointer now checks java indexer/pointer instead of native pointer

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* legacy ops DataBuffer migration prototype

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* ignore device shapeinfo coming from java

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* minor fix

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* minor transformAny fix

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* minor tweak for lazy host allocation

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* - DataBuffer::memcpy method
- bitcast now uses memcpy

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* - IndexReduce CUDA dimension buffer fix

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* views for CPU and CUDA

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* less spam

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* optional memory init

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* async memset

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* - SummaryStats CUDA fix
- DataBuffer.sameUnderlyingData() impl
- execBroadcast fix

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* - reduce3All fix
switch to CUDA 10 temporarily

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* CUDA version

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* proper memory deallocator registration

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* HOST_ONLY workspace allocation

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* temp commit

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* few conflicts resolved

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* few minor fixes

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* one more minor fix

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* NDArray permute should operate on JVM primitives

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* - create InteropDataBuffer for shapes as well
- update pointers after view creation in Java

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* - addressPointer temporary moved to C++

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* CUDA: don't account offset twice

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* CUDA: DataBuffer pointer constructor updated

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* CUDA NDArray.unsafeDuplication() simplified

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* CUDA minor workspace-related fixes

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* CPU DataBuffer.reallocate()

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* print_affinity op

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* print_affinity java side

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* CUDA more tweaks for data locality

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* - compat_string_split tweak
- CudaUtf8Buffer update

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* INDArray.close() mechanic restored

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* one more test fixed

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* - CUDA DataBuffer.reallocate() updated
- cudaMemcpy (synchronous) restored

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* one last fix

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* bad import removed

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* another small fix

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* one special test

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* fix bad databuffer size

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* release primaryBuffer on replace

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* higher timeout

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* disable timeouts

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* dbCreateView now validates offset and length of a view

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* additional validation for dbExpand

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* restore timeout back again

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* smaller distribution for rng test to prevent timeouts

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* CUDA DataBuffer::memcpy now copies to device all the time

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* OpaqueDataBuffer now contains all required methods for interop

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* some javadoc

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* GC on failed allocations

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* minoe memcpu tweak

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* one more bitcast test

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* - NDArray::deviceId() propagation
- special multi-threaded test for data locality checks

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* DataBuffer additional syncStream

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* DataBuffer additional syncStream

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* one ignored test

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* skip host alloc for empty arrays

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* ByteBuffer support is back

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* DataBuffer::memcpy minor fix

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* few minor prelu/bp tweaks

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* nullify-related fixes

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* PReLU fixes (#157)

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* Build fixed

* Fix tests

* one more ByteBuffer signature restored

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* nd4j-jdbc-hsql profiles fix

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* nd4j-jdbc-hsql profiles fix

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* PReLU weight init fix

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* Small PReLU fix

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* - INDArray.migrate() reactivated
- DataBuffer::setDeviceId(...) added
- InteropDataBuffer Z syncToDevice added for views

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* missed file

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* Small tweak

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* cuda 10.2

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* minor fix

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Co-authored-by: shugeo <sgazeos@gmail.com>
Co-authored-by: Alex Black <blacka101@gmail.com>
Co-authored-by: Alexander Stoyakin <alexander.stoyakin@gmail.com>
2020-01-04 13:27:50 +03:00
raver119 451d9d57fd
shape function override (#161)
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2020-01-04 09:06:44 +03:00
Alex Black 29104083cc
Various fixes (#143)
* #8568 ArrayUtil optimization

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* #6171 Keras ReLU and ELU support

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* Keras softmax layer import

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* #8549 Webjars dependency management

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* Fix for TF import names ':0' suffix issue / NPE

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* BiasAdd: fix default data format for TF import

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* Update zoo test ignores

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* #8509 SameDiff Listener API - provide frame + iteration

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* #8520 ND4J Environment

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* Deconv3d

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* Deconv3d fixes + gradient check

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* Conv3d fixes + deconv3d DType test

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* Fix issue with deconv3d gradinet check weight init

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* #8579 Fix BaseCudaDataBuffer constructor fix for UINT16

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* DataType.isNumerical() returns false for BOOL type

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* #8504 Reduce Spark log spam for tests

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* Clean up DL4J gradient check test spam

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* More Gradient check spam reduction

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* SameDiff test spam reduction

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* Fixes for FlatBuffers mapping

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* SameDiff log spam cleanup

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* Tests should extend BaseNd4jTest

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* Remove debug line in c++ op

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* ND4J test spam cleanup

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* DL4J test spam reduction

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* More Dl4J and datavec test spam cleanup

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* Fix for bad conv3d test

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* Additional test

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* Embedding layers: don't inherit global default activation function

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* Trigger CI

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* Consolidate all BaseDL4JTest classes to single class used everywhere; make timeout configurable per class

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* Test fixes and timeout increases

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* Timeouts and PReLU fixes

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* Restore libnd4j build threads arg for CUDA build

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* Increase timeouts on a few tests to avoid spurious failures on some CI machines

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* More timeout fixes

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* More test timeout fixes

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* Tweak timeout for one more test

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* Final tweaks

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* One more ignore

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2020-01-04 13:45:07 +11:00
Alex Black ce02b6fae7
Small fixes (#140)
* Allow scalar op result array auto allocation

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* Don't swallow underlying exception for calculateOutputShape execution failures

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* Ignore for known keras failure

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2019-12-21 17:00:46 +11:00
raver119 a5f5ac72b1
reduce bool changes (#118)
* reduce bool changes

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* reduce bool tweaks

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2019-12-09 20:08:59 +03:00
shugeo e09a785232 Shugeo resize fix5 (#102)
* Refactored resize images ops to use TF-like bool args as input.

* Refactored helpers for cpu implementation of resize_bilinear and resize_nearest_neighbor ops.

* Refactored cuda implementation for image.resize_bilinear and image.resize_nearest_neighbor ops helpers.

* Refactored nearest_neighbor resize op.

* Added a pair of tests for special case of resize_bilinear algorithm.

* Fixed issue with resize_bilinear op.

* Refactored cpu implementation for helpers with resize_nearest_neighbor op.

* Final fixed for resize ops to conform TF v.1.5

* Refactored cuda helpers for resize_neares_neighbor op.

* Fixed resize_bilinear to accept proper data.

* Fixed issue with non-float input for resize_bilinear op.

* Refactored cuda helper for resize_bilinear to proper process non-float inputs.

* Added tests for resize_bilinear to int inputs.

* Fixed ResizeBilinear wrapper

* Tests fixed

* Fixed float and bool constant to avoid overflow for some kind of compilers.

* Corrected float constants with float data type.

* Added f suffix for float constants.

* Corrected float constant to avoid overflow with initializing lists.

* Corrected float initializing list with float input.

* Corrected bool constant with initalizing list.

* Corrected float and bool values with initializing lists.

* Fixed wrong constant.

* Fixed issue with 1x1 input picture for resize.

* ResizeBilinear default values on import fix

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2019-12-05 22:05:33 +03:00
Fariz Rahman 0d14032d26 TF Updates (#87)
* tf updates

* pom

* copyright

* graphrunner tests

* gpu test

* getSessionOptionsConfigProto

* dtype fix

* Small fix

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* cast graphs

* savemodel test fix

* testresource instead of local

* Logging level

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* gson dependency issue fix; fix GraphRunnerTest for no session options config case

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* Final tweaks

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* few minor fixes

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* one more fix

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* Tweak configuration for GraphRunnerTest

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* nd4j align config

* tf warmup
2019-12-04 17:11:03 +11:00
Yurii Shyrma d19eeaec52 Shyrma casual conv1d (#90)
* - add causal mode of padding to convolutions

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* - add additional tests for causal conv1d

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* - add causal mode for cuda conv kernels

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* Java side of Conv1D changes

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* Add Conv1DDerivative op

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* Causal Conv1D gradient checks

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* Tweaks

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* - add causal padding mode to conv2d_bp

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* More thorough causal conv1d tests

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2019-11-29 14:14:30 +03:00
Samuel Audet 5e07998e59 Add support for CUDA 10.2 (#89) 2019-11-29 16:31:03 +11:00
shugeo 009007120b Shugeo_release_fixes3 (#81)
* Implementation for non_max_suppression_v3 was added. Initial version

* Added check for overcome threshold.

* Added definition for V3 method.

* java remapping for NonMaxSuppressionV3

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* Fixed proporly processing of an empty output and test.

* Refactored op to less threshold data to float.

* Implemented cuda-based helper for non_max_suppression_v3 op.

* Fixed fake_quant_with_min_max_vars op.

* Fixed tests with float numbers.

* - assert now stops execution
- sortByKey/sortByValue now have input validation

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* missing var

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* Fixed proper processing for zero max_size inputs.

* Refactored kernel callers.

* Fixed return statement for logdet op helper.

* Refactored unsorted segment SqrtN op.

* get back 8 tail bytes on CUDA

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* Refactored segment prod ops and helpers for cuda and tests.

* Additional test.

* CudaWorkspace tests updated for 8 tail bytes

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* special atomic test

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* atomicMul/atomicDiv fix for 16bit values

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* Eliminated waste prints.
2019-11-28 21:08:51 +03:00
Alex Black e910ce75ec
Various Fixes (#75)
* #8431 Cast loss function weights array automatically

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* Add 'regex verbose mode' printing (ExecDebugListener) for TFGraphTestAllSameDiff'

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* Class import mapping fix

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* Reshape fixes

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* Don't swallow first exception in NativeOpExecutioner.exec(CustomOp)

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2019-11-23 20:06:12 +11:00
shugeo 4187190609 Shugeo release fix2 (#70)
* Corrected input checking and tests for bitcast op.

* Fixed an issue with non_max_suppression form generation and processing with score threshold given.

* Fixed bilinear resize kernel and tests.

* push for Serhii

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* Added test for nearest_neighbor resize with int input.

* Added data type check for input/output match.

* Eliminate error in macros.

* Improved output message for type checking.

* Fixed input/output types for op.

* Eliminated waste logging.

* Refactored resize_bilinear helper for multithreading for cpu platform.

* Cosmetic changes only.

* Fixed error for string substitution.

* Skip test for cbow_batch with cuda.

* fix for resizeNearestNeighbor output dtype

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* Refactored non_max_suppression helper.

* Refactored shape generation and input handling.

* Added additional test.
2019-11-22 22:42:44 +03:00
Samuel Audet ff73e6da3f ND4J: Fix OpenBLAS loading for nd4j-native (#64)
* ND4J: Fix OpenBLAS loading for nd4j-native and remove bundling of OpenMP

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* Bundle back libgomp.so.1 for Linux

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* Readd preload directories for ARM

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* Add back preloads for GCC on Windows

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* Add explicit preloadpaths for ARM and POWER to bundle correct library

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2019-11-21 15:54:41 +03:00
raver119 064a56ccf1
Few fixes (#66)
* skip legacy transforms execution in case of empty input arrays

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* - BroadcastBool ops now accept extraParams to make MatchCondition possible
- TrueBroadcastHelper now uses samediff::threads

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* java side

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* trigger jenkins

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* update LessThanOrEqual opNum mapping

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* update LessThanOrEqual opNum mapping

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2019-11-21 15:43:03 +03:00
raver119 83cb0d9329
[WIP] Create and small fix (#67)
* - create op
- skip exec for empty inputs for non_max_suppression
- EmptyHandling idea

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* Create op and mapping for it

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2019-11-21 13:31:20 +03:00
Yurii Shyrma 66b84b38cf
Shyrma mmul (#58)
* - get rid of some copy procedures in mmulHelper ops

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* - further work on embedding cuda api for batched gemm (cublasGemmBatchedEx) in our mmulHelper class

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* - further work on cuda batched gamm api

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* - write own cuda kernel performing batched gemm

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* missing include in MmulHelper

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* - forgot to keep in code previous correct kernels for mmulNxN, since it may happen that new onw will fail for some reason in future

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* disable old tensordot

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* - rewrite cuda kernels for usualGemm and usualGemv

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* - profiling mmul helpers

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* - prints to check shapes were added

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* - correct type of output array Cin mmulNxN

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* - take into account possible nans in C array

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* slightly change numThreads message

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* - make corrections in accordance to given notes in pr review

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2019-11-19 15:39:36 +02:00
raver119 c5cbdcd8f4
[WIP] clang for jcpp (#53)
* clang as compiler for jcpp

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* we don't need macos profile

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2019-11-17 09:45:30 +03:00
raver119 1780dcc883
[WIP] Small fixes here and there (#50)
* one range test

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* few Context convenience singatures

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* one more range test

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* "range" "fix"

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* adjuct_contrast_v2 now allows scale factor to be provided via input_variable

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* adjust_contrast now allows scale factor as variable too

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* bitcast shape tests

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* BitCast import dtype added

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* few more BitCast signatures

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2019-11-15 17:04:29 +03:00
raver119 c5b912bddf
few changes for openblas and jcpp preloads (on macos) (#46)
Signed-off-by: raver119 <raver119@gmail.com>
2019-11-14 19:50:24 +03:00
raver119 1eb3de90d7
[WIP] Platform helpers switches (#44)
* - platform helpers can be disabled on per-op basis now via Context::allowHelpers
- java has access to it as well

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* global platform-helpers trigger

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* few signatures renamed

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* - few new env variables to follow
- maxThreads/masterThreads differentiation

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* Javadoc update

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2019-11-14 14:35:02 +03:00
Alex Black 47d19908f4
Various fixes (#43)
* #8172 Enable DL4J MKLDNN batch norm backward pass

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* #8382 INDArray.toString() rank 1 brackets / ambiguity fix

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* #8308 Fix handful of broken links (inc. some in errors)

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* Unused dependencies, round 1

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* Unused dependencies, round 2

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* Unused dependencies, round 3

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* Small fix

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* Uniform distribution TF import fix

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2019-11-14 19:38:20 +11:00
raver119 48df1acdfb
[WIP] ThreadPool (#8)
This PR removes OpenMP use in 95% of cases
2019-11-13 17:04:59 +03:00
Samuel Audet 73b5a508fc Update dependencies to just released JavaCPP and JavaCV 1.5.2
Signed-off-by: Samuel Audet <samuel.audet@gmail.com>
2019-11-07 17:57:34 +09:00
Alex Black d82877b18b
Various SameDiff fixes (#21)
* MKLDNN LSTM forward implementation (disabled pending #8331)

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* #8318 add SameDiff.calculateGradientsAndOutputs

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* Disable mkldnn backprop for now - pending fix, issue #8335

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* #8337 Fix CudaExecutioner unnecessary result array allocation/replacement

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* Small FlatBuffers serde fix, UInt8

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* #8135 ImagePreProcessingScaler - add segmentation support

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* #8319 Ensure listeners are called when they are supposed to be called

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* #8214 UNet (non-pretrained) last conv layer kernal size fix

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2019-11-02 11:25:53 +11:00
Alexander Stoyakin b816845797
Fixing nd4j-cuda build (#20)
* Roll back recent fix to restore build.

* Fix compilation.

* presets updated

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2019-11-01 15:59:29 +02:00
Alexander Stoyakin 45a40c8a89
DL4J/ND4J: Do pass on integer casts (#15)
* Int cast fixes.

* Revert "Int cast fixes."

This reverts commit aa36e8ca

* Int casts

* Int cast

* Int casts

* Get rid of int casts. Dropping deprecated aggregate ops.

* java scatterUpdate changes

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* c++ scatterUpdate changes

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* Remove aggregated ops.

* Restored test

* Tests restored.

* Minor fixes
2019-10-31 11:23:09 +02:00
raver119 5a4d2e8b31
[WIP] SVD (#16)
* - new SVD constructor
- OrthogonalDistribution now uses SVD custom op

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* shapes fixed

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2019-10-28 12:31:01 +03:00
Alex Black d333d29099
SameDiff cleanup and fixes (#12)
* #8160 Remove resolvePrepertiesFromSameDiffBeforeExecution

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* SameDiff API cleanup

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* More SameDiff cleanup

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* Small fixes

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* #8248 Switch SameDiff variable init from lazy to creation time for more predictable behaviour

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* #8252 TanhDerivative javadoc

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* #8225 Deconvolution2D input validation

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* #8265 Switch SameDiff.outputs() to user settable, instead of unreliable 'best guess'

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* #8224 SameDiff.zero and .one create constants, not variables

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* More cleanup and fixes

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* Small test fix

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* Small fix

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* DL4J SameDiff fixes

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* Re-add hack for Deconvolution2DLayer until #8315 is resolved

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* #8270 Move CUDA device/version logging to Java; can be disabled via existing org.nd4j.log.initialization system property

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* All ND4J init logging checks system property

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* Small tweak

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* Remove redundant device logging

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* One more fix

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* UX improvements

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* Deconv fix

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* Add deconv tests

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* Cleanup

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* Remove debug code

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2019-10-26 12:38:08 +11:00
Alex Black 3f0b4a2d4c
SameDiff execution, TF and memory management overhaul (#10)
* SameDiff execution memory management improvements, round 1

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* Round 2

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* Round 3

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* Clear node outputs closed array references; Slight change to OpValidation internals to not rely on cached op outputs

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* Next steps

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* Next step

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* Cleanup

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* More polish

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* Fix

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* Add WeakIdentityHashmap

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* Session fixes for control ops and next steps

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* More fixes

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* Fixes

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* First steps for training session + in-line updating

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* Next steps

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* Fix losses and history during training

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* More fixes

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* BiasAdd and other fixes

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* Don't use SDVariable.getArr() in TFGraphTestAllHelper (import tests)

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* Small fix

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* Cleanup

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* First steps for new dependency tracking approach

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* Start integrating dependency tracking for memory management

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* Non-control op dependency tracking works/passes

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* Switch/merge

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* Next steps

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* Cleanup and next steps

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* Small fixes

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* Fix issue dependency tracking for initial variables/constants

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* Add check for aliases when determining if safe to close array

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* First pass on new TF graph import class

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* Import fixes, op fixes

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* Cleanup and fixes for new TF import mapper

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* More cleanup

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* Partial implementation of new dependency tracker

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* Next steps

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* AbstractDependencyTracker for shared code

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* Overhaul SameDiff graph execution (dependency tracking)

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* More fixes, cleanup, next steps

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* Ad no-op memory manager, cleanup, fixes

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* Fix switch dependency tracking

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* INDArray.toString: no exception on closed arrays, just note closed

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* Fix enter and exit dependency tracking

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* TensorArray memory management fixes

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* Add unique ID for INDArray instances

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* Fix memory management for NextIteration outputs in multi-iteration loops

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* Remove (now unnecessary) special case handling for nested enters

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* Cleanup

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* Handle control dependencies during execution; javadoc for memory managers

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* Cleanup, polish, code comments, javadoc

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* Cleanup and more javadoc

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* Add memory validation for all TF import tests - ensure all arrays (except outputs) are released

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* Clean up arrays waiting on unexecuted ops at the end of execution

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* Fixes for enter op memory managent in the context of multiple non-nested loops/frames

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* Fix order of operation issues for dependency tracker

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* Always clear op fields after execution to avoid leaks or unintended array reuse

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* Small fixes

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* Re-implement dtype conversion

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* Fix for control dependencies execution (dependency tracking)

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* Fix TF import overrides and filtering

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* Fix for constant enter array dependency tracking

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* DL4J Fixes

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* More DL4J fixes

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* Cleanup and polish

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* More polish and javadoc

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* More logging level tweaks, small DL4J fix

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* Small fix to DL4J SameDiffLayer

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* Fix empty array deserialization, add extra deserialization checks

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* FlatBuffers control dep serialization fixes; test serialization as part of all TF import tests

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* Variable control dependencies serialization fix

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* Fix issue with removing inputs for ops

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* FlatBuffers NDArray deserialization fix

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* FlatBuffers NDArray deserialization fix

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* Small fix

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* Small fix

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* Final cleanup/polish

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2019-10-23 21:19:50 +11:00
Alexander Stoyakin f31661e13b
Merge pull request #7 from KonduitAI/asto_nd4s_10172019
KDTree optimization
2019-10-23 12:11:25 +03:00
Robert Altena 83d958d536 Sparse matrix refactoring. (#8238)
* remove sparse method from INDArray.

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* remove gemm

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* remove useage of n4j.sparseFactory

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* Nd4j.sparseFactory removed.

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* sparseNDArray deleted.

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* iremove more sparse calls and constants.

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* remove SparseBlasWrapper.

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* delete BaseSparseBlaswrapper.

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* remove 3 sparse factory classes.

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* delete SparseCPULevel.

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* deletes JcusparseLevel, CUDASparselevel.

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* delete nativeCPU sparse classes.

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* removes sparse methods from NDArrayFactory.

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* more deletes.

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* delete (ignored) tests. BaseSparseNDArray.

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* deletes ISparseNDArray.

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* remove sparse methods from indArray.

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* deletes sparse classes.

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2019-09-17 22:56:29 +03:00
AlexDBlack a66e03355e Merge remote-tracking branch 'fork/master' 2019-09-12 12:20:57 +10:00
raver119 07901ceb69 few more mkldnn dependencies removed
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2019-09-12 04:55:59 +03:00
raver119 98e2814879
Platform helpers (#8216)
* platform helpers draft

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* typo

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* disable platform cmake

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* another draft

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* mkldnn convolution refactored

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* minor tweaks

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* one more safety check

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* prototype works

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* meh

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* force static library mode for mkldnn

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* - ismax fix
- experimental arg fix
- don't enforce openblas on Apple hardware

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* bunch of small fixes

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* declare concurrent

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* - MKLDNN version upgrade to 1.0.2
- avgpool2d/maxpool2d APIs update

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* - avgpool2d_bp/maxpool2d_bp APIs update

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* - conv2d/batchnorm APIs update

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* - lrn/conv2d_bp/conv3d/conv3d_bp APIs update

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* all ops converted to MKLDNN 1.x

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* bunch of tweaks

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* namespace for platform helpers

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* make sure platform helpers aren't opimized out

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* build cpu_features on x86 systems

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* build cpu_features on x86 systems

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* more of cpu_features

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* - mkldnn removed from java
- cpu_features checks in CpuNDArrayFactory

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* F16C definition renamed

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* some mkldnn rearrangements

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* check supported instructions before doing anything

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* typo

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* missied impl

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* BUILD_PIC option

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* conv2d fix

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* avgpool3d fix

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* avgpool3d_bp fix

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* avgpool2d_bp leak fix

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* avgpool3d_bp leak fix

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* maxpool bp leaks fixed

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* printf removed

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* batchnorm fix

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* AVX warning/error polishing

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* Fix

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* More polish

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* Polish

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* remove previous MKL-DNN support layer

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* avx2 tweak

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* allow static for apple

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* exclude mkldnn in one more place

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* exclude mkldnn in one more place

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* restore OPENBLAS_PATH use

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* add runtime check for avx/avx2 support

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* convolution_auto

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* Add logic for helper argument

* minor test fix

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* few tweaks

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* few tweaks

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* skip OpTracker props for non-x86 builds

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* linux arm isn't x86 :)

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* avx-512

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* CUDA presets fix

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* BUILD_PIC

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* prefetchw for avx2

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* BUILD_PIC again

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2019-09-11 21:50:28 +03:00
Robert Altena c99f980513 INDArray javadoc (#246)
* javadoc

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* javadoc

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* javadoc

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* review fixes.

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2019-09-09 13:09:31 +10:00
AlexDBlack a76a44e198 Merge remote-tracking branch 'fork/master' 2019-09-05 22:04:25 +10:00
Robert Altena f25e3e71e5 remove lengthLong (#236)
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2019-09-05 11:19:38 +10:00
AlexDBlack b7226bdd7a Merge
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2019-09-05 00:54:11 +10:00
raver119 a90c7dd995
[WIP] Last set of changes (#234)
* mmul op instead of cublasSgemm

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* transB

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* jcpp handles

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* bitwise and/or/xor

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* bitwise and/or/xor mapping

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* cuda/cublas version check

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* add expected version

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* cuda/cublas version check in java

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* one more error check

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* build fix

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* build fix

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* build fix

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* one more fix

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* skip CUDA version check for now

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* better wording

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* few more tweaks

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* few more tweaks

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2019-09-04 14:41:08 +03:00
raver119 7abc574eeb
Snapshot update (#8194)
* fix double consumption of rng on cpu

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* Shyrma docs (#222)

* - documenting and profiling matrix_set_diag cuda kernel

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* - correct formula of pnorm pooling in cuda 2d/3d kernels
- remove helper matrix_diag which duplicates work of helper matrix_set_diag

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* cublasHandle sharing + lock

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* cublasHandle sharing + lock

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* Documentation from serialization/deserialization in NLP (#221)

* refactoring

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* Javadocs

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* Javadoc fixed

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* Cleanup

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* dedicated lock for getCudaCublasHandle

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* Small fixes (#223)

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* ELU DL4J fixes (#224)

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* javadoc (#225)

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* Small test compilation fix (#226)

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* #8182 remove spark version suffix (#227)

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* [WIP] Thread safety (#229)

* sync after cublas*gemm

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* mutex for CublasHelper

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* don't store cublasHandle in LaunchContext, it's per-device anyway

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* some printout

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* check for field instead

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* pew-pew

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* don't release ContextBuffers until device changed

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* small tweak

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* some logging in sgemm

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* stream sync

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* some more logging

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* some more error checks

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* one fancy test

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* one fancy test

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* minor AffinityManager fix

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* cudaEvent error logging improvement

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* ConstantHelper thread safety

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* - minor corrections in ConstantTadHelper

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* ConstantShapeHelper thread safety

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* ConstantTadHelper.cu updated

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* logging off

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* logging off

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2019-09-03 22:02:02 +03:00
raver119 dddc8a1143
[WIP] Thread safety (#229)
* sync after cublas*gemm

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* mutex for CublasHelper

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* don't store cublasHandle in LaunchContext, it's per-device anyway

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* some printout

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* check for field instead

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* pew-pew

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* don't release ContextBuffers until device changed

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* small tweak

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* some logging in sgemm

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* stream sync

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* some more logging

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* some more error checks

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* one fancy test

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* one fancy test

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* minor AffinityManager fix

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* cudaEvent error logging improvement

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* ConstantHelper thread safety

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* - minor corrections in ConstantTadHelper

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* ConstantShapeHelper thread safety

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* ConstantTadHelper.cu updated

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* logging off

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* logging off

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2019-09-03 22:00:38 +03:00
raver119 d3253aff3f dedicated lock for getCudaCublasHandle
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2019-09-02 20:01:13 +03:00
raver119 2129d5bcac cublasHandle sharing + lock
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2019-09-02 16:52:28 +03:00
raver119 18828f9725 cublasHandle sharing + lock
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2019-09-02 16:52:10 +03:00
AlexDBlack 7ded4416cb Merge remote-tracking branch 'fork/master' 2019-09-02 18:52:12 +10:00
Alex Black 82c9dc5743
ELU fix (#219)
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2019-09-02 18:37:05 +10:00
Robert Altena 6d04d30c94 INDArray.java javadoc (#215)
* javadoc

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* javadoc

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2019-09-02 16:06:20 +10:00
Robert Altena ef1de6a4aa rcorbish #8617 (#8188)
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2019-09-01 07:17:36 +03:00
raver119 1003428a18
[WIP] Int broadcastables (#195)
* Removed invalid resource and fixed tests

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* legacy scalar/pairwise/broadcast int ops

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* NDArray int broadcastables

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* few more bitwise tests

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* java side update

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* Argument type changed for shift ops

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* legacy scalar/pairwise/broadcast int ops

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* NDArray int broadcastables

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* few more bitwise tests

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* java side update

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* Argument type changed for shift ops

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2019-08-30 10:12:40 +03:00
Alex Black dcc2baa676
Version upgrades (#199)
* DataVec fixes for Jackson version upgrade

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* DL4J jackson updates + databind version 2.9.9.3

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* Shade snakeyaml along with jackson

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* Version fix

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* Switch DataVec legacy JSON format handling to mixins

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* Next set of fixes

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* Cleanup for legacy JSON mapping

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* Upgrade commons compress to 1.18; small test fix

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* New Jackson backward compatibility for DL4J - Round 1

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* New Jackson backward compatibility for DL4J - Round 2

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* More fixes, all but legacy custom passing

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* Provide an upgrade path for custom layers for models in pre-1.0.0-beta JSON format

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* Legacy deserialization cleanup

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* Small amount of polish - legacy JSON

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* Upgrade guava version

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* IEvaluation legacy format deserialization fix

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* Upgrade play version to 2.7.3

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* Update nd4j-parameter-server-status to new Play API

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* Update DL4J UI for new play version

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* More play framework updates

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* Small fixes

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* Remove Spark 1/2 adapter code from DataVec

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* datavec-spark dependency cleanup

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* DL4J spark updates, pt 1

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* DL4J spark updates, pt 2

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* DL4J spark updates, pt 3

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* DL4J spark updates, pt 4

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* Test fix

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* Another fix

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* Breeze upgrade, dependency cleanup

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* Add Scala 2.12 version to pom.xml

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* change-scala-versions.sh - add scala 2.12, remove 2.10

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* Move Spark version properties to parent pom (now that only one spark version is supported)

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* DataVec Play fixes

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* datavec play dependency fixes

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* Clean up old spark/jackson stuff

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* Cleanup jackson unused dependencies

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* Dropping redundant dependency

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* Removed scalaxy dependency

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* DataVec fixes for Jackson version upgrade

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* DL4J jackson updates + databind version 2.9.9.3

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* Shade snakeyaml along with jackson

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* Version fix

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* Switch DataVec legacy JSON format handling to mixins

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* Next set of fixes

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* Cleanup for legacy JSON mapping

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* Upgrade commons compress to 1.18; small test fix

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* New Jackson backward compatibility for DL4J - Round 1

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* New Jackson backward compatibility for DL4J - Round 2

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* More fixes, all but legacy custom passing

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* Provide an upgrade path for custom layers for models in pre-1.0.0-beta JSON format

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* Legacy deserialization cleanup

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* Small amount of polish - legacy JSON

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* Upgrade guava version

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* IEvaluation legacy format deserialization fix

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* Upgrade play version to 2.7.3

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* Update nd4j-parameter-server-status to new Play API

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* Update DL4J UI for new play version

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* More play framework updates

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* Small fixes

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* Remove Spark 1/2 adapter code from DataVec

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* datavec-spark dependency cleanup

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* DL4J spark updates, pt 1

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* DL4J spark updates, pt 2

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* DL4J spark updates, pt 3

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* DL4J spark updates, pt 4

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* Test fix

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* Another fix

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* Breeze upgrade, dependency cleanup

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* Add Scala 2.12 version to pom.xml

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* change-scala-versions.sh - add scala 2.12, remove 2.10

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* Move Spark version properties to parent pom (now that only one spark version is supported)

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* DataVec Play fixes

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* datavec play dependency fixes

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* Clean up old spark/jackson stuff

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* Cleanup jackson unused dependencies

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* Add shaded guava

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* Dropping redundant dependency

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* Removed scalaxy dependency

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* Ensure not possible to import pre-shaded classes, and remove direct guava dependencies in favor of shaded

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* ND4J Shaded guava import fixes

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* DataVec and DL4J guava shading

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* Arbiter, RL4J fixes

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* Build fixed

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* Fix dependency

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* Fix bad merge

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* Jackson shading fixes

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* Set play secret, datavec-spark-inference-server

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* Fix for datavec-spark-inference-server

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* Arbiter fixes

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* Arbiter fixes

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* Small test fix

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2019-08-30 14:35:27 +10:00
raver119 b472d7d8c8
[WIP] few more fixes (#182)
* one noop test

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* skip input validation for no-input ops

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* - one more noop empty test
- one more validation before sync

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* typo

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* one more validation fix

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* CUDA empty reductions java side

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* one svd test

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* Corrected segment_mean helpers and added another test.

* Refactored segment_mean kernels to avoid race_condition.
2019-08-27 21:00:38 +03:00
raver119 a49f7c908b
[WIP] More fixes (#178)
* skip string arrays for device validation

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* histogram_fixed_width now really supports indexing types

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2019-08-27 13:21:01 +03:00
raver119 05d45ec050 IndexReduce along dim CUDA fix
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2019-08-27 11:31:59 +03:00
raver119 df84bc7255
[WIP] More tweaks (#173)
* CUDA empty reduction

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* - listdiff synchronization fix for CUDA
- listdiff test

Signed-off-by: raver119 <raver119@gmail.com>

* - IndexReduce ops now allow INDEXING_TYPES output
- topK op accepts only INDEXING_TYPES as output

Signed-off-by: raver119 <raver119@gmail.com>
2019-08-27 10:37:10 +03:00
raver119 25e5c23eae
[WIP] Error handling (#169)
* CUDA reverse rewrite + couple of tests

Signed-off-by: raver119 <raver119@gmail.com>

* don't throw exception on invalid pointer

Signed-off-by: raver119 <raver119@gmail.com>

* data types validation for fastpath exec mode + 2 tests

Signed-off-by: raver119 <raver119@gmail.com>

* data types validation for fastpath exec mode + 2 tests

Signed-off-by: raver119 <raver119@gmail.com>

* ismax allowed dtypes tweak

Signed-off-by: raver119 <raver119@gmail.com>

* lastErrorCode + lastErrorMessage for native exceptions handling

Signed-off-by: raver119 <raver119@gmail.com>

* exportable ErrorReference

Signed-off-by: raver119 <raver119@gmail.com>

* check error codes in java

Signed-off-by: raver119 <raver119@gmail.com>

* - consume lastErrorCode
- fast_in dtype validation fix

Signed-off-by: raver119 <raver119@gmail.com>

* - sg/cb allowed output type change
- minor logging fix for data type validation

Signed-off-by: raver119 <raver119@gmail.com>
2019-08-26 19:57:51 +03:00
raver119 f03b0ee78f
[WIP] more fixes (#159)
* Added test for MatrixInverse with double input. Fixed matrixDeterminantKernel.

* Fixed kernels to avoid waste templating.

* Fixed logDeterminant kernel.

* Refactored type check for lup'

* - decrease blockDim value for zeta op

Signed-off-by: Yurii <yurii@skymind.io>

* Added print for compound matrix with CUDA.

* Refactored upper matrix invertion kernels.

* - provide move constructor and move assignment operator for OpArgsHoder class

Signed-off-by: Yurii <yurii@skymind.io>

* Refactored usage of launch context.

* - add test for mergemax

Signed-off-by: Yurii <yurii@skymind.io>

* get rid of AveragingArrayProxy

Signed-off-by: raver119 <raver119@gmail.com>

* Refactoring of LUP inversion.

* Added prints for invertion.

* - add OpArgsHolder copy constructor and assignment operator

Signed-off-by: Yurii <yurii@skymind.io>

* Added test for lower inversion

* - fix bug in upsampling2d/3d_bp op

Signed-off-by: Yurii <yurii@skymind.io>

* Added expensive printfs to kernel.

* Refactored expensive kernel prints.

* Refactored expensive printfs

* - remove nullify

Signed-off-by: Yurii <yurii@skymind.io>

* Eliminated waste prints with tests.

* upsampling2d_bp test

Signed-off-by: raver119 <raver119@gmail.com>

* test updated

Signed-off-by: raver119 <raver119@gmail.com>
2019-08-23 19:20:50 +03:00