Commit Graph

13 Commits (722d5a052af17f19dcd42ef923b9a5b63ab2cbee)

Author SHA1 Message Date
Alexander Stoyakin 455a5d112d
Fixes for codegen generated classes and build improvements (#367)
* Input format extended

* Deleted redundant code

* Added weights format to conv2d config

* Refactoring

* dl4j base test functionality

* Different tests base class per module

* Check base class for dl4j-graph subproject tests

* Check if test classes extend BaseDL4JTest

* Use nd4j-common-tests as transient dependency

* Enums and tests added

* Added codegenerated methods

* Use namespace methods

* Replace DifferentialFunctionFactory  with codegenerated classes

* Fixed linspace

* Namespaces regenerated

* Namespaces used instead of factory

* Regenerated base classes

* Input format extended

* Added weights format to conv2d config

* Refactoring

* dl4j base test functionality

* Different tests base class per module

* Check base class for dl4j-graph subproject tests

* Check if test classes extend BaseDL4JTest

* Use nd4j-common-tests as transient dependency

* Enums and tests added

* Added codegenerated methods

* Use namespace methods

* Replace DifferentialFunctionFactory  with codegenerated classes

* Fixed linspace

* Namespaces regenerated

* Regenerated base classes

* Regenerated namespaces

* Generate nd4j namespaces

* INDArrays accepting constructors

* Generated some ops

* Some fixes

* SameDiff ops regenerated

* Regenerated nd4j ops

* externalErrors moved

* Compilation fixes

* SquaredDifference - strict number of args

* Deprecated code cleanup. Proper base class for tests.

* Extend test classes with BaseND4JTest

* Extend test classes with BaseDL4JTest

* Legacy code

* DL4J cleanup

* Exclude test utils from base class check

* Tests fixed

* Arbiter tests fix

* Test dependency scope fix + pom.xml formatting

Signed-off-by: Alex Black <blacka101@gmail.com>

* Significant number of fixes

Signed-off-by: Alex Black <blacka101@gmail.com>

* Another round of fixes

Signed-off-by: Alex Black <blacka101@gmail.com>

* Another round of fixes

Signed-off-by: Alex Black <blacka101@gmail.com>

* Few additional fixes

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* DataVec missing test scope dependencies

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Co-authored-by: Alex Black <blacka101@gmail.com>
2020-04-20 10:27:13 +10:00
Alex Black 0756e3fe70
Small fixes. (#206)
* Logging format tweaks for file logging

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* Min abs error tweak for Util layer gradient checks

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* #8648 Fix SameDiff NPE instead of error for missing placeholders

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* Test runtime reduction

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2020-02-01 18:19:36 +11:00
raver119 ba961c7601
DataTypes & FlatBuffers (#197)
* flatbuffers version upgrade

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* flatbuffers version upgrade java side

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* flatbuffers dependency version upgrade java side

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* MKLDNN version upgrade

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* DArgs first pass

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* signatures first pass

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* signatures second pass

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* signatures third pass

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* signatures third pass

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* signatures fourth pass

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* signatures fifth pass

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* flatbuffers UI version upgrade java side

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* flatbuffers ui update

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* flatbuffers downgrade

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* flatbuffers downgrade java side

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2020-01-30 10:07:24 +03:00
Alex Black a25bb6a11c
Unit/integration test split + test speedup (#166)
* Add maven profile + base tests methods for integration tests

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* Switch from system property to environment variable; seems more reliable in intellij

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* Add nd4j-common-tests module, and common base test; cleanup

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* Ensure all ND4J tests extend BaseND4JTest

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* Test spam reduction, import fix

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* Add test logging to nd4j-aeron

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* Fix unintended change

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* Reduce sprint test log spam

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* More test spam cleanup

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* Significantly speed up TSNE tests

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* W2V iterator test unit/integration split

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* More NLP test speedups

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* Avoid debug/verbose mode leaking between tests

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* test tweak

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* Arbiter extends base DL4J test

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* Arbiter test speedup

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* nlp-uima test speedup

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* More test speedups

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* Fix ND4J base test

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* Few small ND4J test speed improvements

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* DL4J tests speedup

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* More tweaks

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* Even more test speedups

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* More tweaks

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* Various test fixes

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* More test fixes

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* Add ability to specify number of threads for C++ ops in BaseDL4JTest and BaseND4JTest

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* nd4j-aeron test profile fix for CUDA

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2020-01-22 22:27:01 +11:00
Samuel Audet 5e07998e59 Add support for CUDA 10.2 (#89) 2019-11-29 16:31:03 +11:00
Alex Black 47d19908f4
Various fixes (#43)
* #8172 Enable DL4J MKLDNN batch norm backward pass

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* #8382 INDArray.toString() rank 1 brackets / ambiguity fix

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* #8308 Fix handful of broken links (inc. some in errors)

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* Unused dependencies, round 1

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* Unused dependencies, round 2

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* Unused dependencies, round 3

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* Small fix

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* Uniform distribution TF import fix

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2019-11-14 19:38:20 +11:00
Alex Black d333d29099
SameDiff cleanup and fixes (#12)
* #8160 Remove resolvePrepertiesFromSameDiffBeforeExecution

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* SameDiff API cleanup

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* More SameDiff cleanup

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* Small fixes

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* #8248 Switch SameDiff variable init from lazy to creation time for more predictable behaviour

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* #8252 TanhDerivative javadoc

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* #8225 Deconvolution2D input validation

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* #8265 Switch SameDiff.outputs() to user settable, instead of unreliable 'best guess'

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* #8224 SameDiff.zero and .one create constants, not variables

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* More cleanup and fixes

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* Small test fix

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* Small fix

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* DL4J SameDiff fixes

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* Re-add hack for Deconvolution2DLayer until #8315 is resolved

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* #8270 Move CUDA device/version logging to Java; can be disabled via existing org.nd4j.log.initialization system property

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* All ND4J init logging checks system property

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* Small tweak

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* Remove redundant device logging

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* One more fix

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* UX improvements

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* Deconv fix

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* Add deconv tests

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* Cleanup

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* Remove debug code

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2019-10-26 12:38:08 +11:00
Alex Black 3f0b4a2d4c
SameDiff execution, TF and memory management overhaul (#10)
* SameDiff execution memory management improvements, round 1

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* Round 2

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* Round 3

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* Clear node outputs closed array references; Slight change to OpValidation internals to not rely on cached op outputs

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* Next steps

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* Next step

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* Cleanup

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* More polish

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* Fix

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* Add WeakIdentityHashmap

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* Session fixes for control ops and next steps

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* More fixes

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* Fixes

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* First steps for training session + in-line updating

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* Next steps

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* Fix losses and history during training

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* More fixes

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* BiasAdd and other fixes

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* Don't use SDVariable.getArr() in TFGraphTestAllHelper (import tests)

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* Small fix

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* Cleanup

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* First steps for new dependency tracking approach

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* Start integrating dependency tracking for memory management

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* Non-control op dependency tracking works/passes

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* Switch/merge

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* Next steps

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* Cleanup and next steps

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* Small fixes

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* Fix issue dependency tracking for initial variables/constants

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* Add check for aliases when determining if safe to close array

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* First pass on new TF graph import class

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* Import fixes, op fixes

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* Cleanup and fixes for new TF import mapper

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* More cleanup

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* Partial implementation of new dependency tracker

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* Next steps

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* AbstractDependencyTracker for shared code

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* Overhaul SameDiff graph execution (dependency tracking)

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* More fixes, cleanup, next steps

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* Ad no-op memory manager, cleanup, fixes

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* Fix switch dependency tracking

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* INDArray.toString: no exception on closed arrays, just note closed

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* Fix enter and exit dependency tracking

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* TensorArray memory management fixes

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* Add unique ID for INDArray instances

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* Fix memory management for NextIteration outputs in multi-iteration loops

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* Remove (now unnecessary) special case handling for nested enters

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* Cleanup

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* Handle control dependencies during execution; javadoc for memory managers

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* Cleanup, polish, code comments, javadoc

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* Cleanup and more javadoc

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* Add memory validation for all TF import tests - ensure all arrays (except outputs) are released

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* Clean up arrays waiting on unexecuted ops at the end of execution

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* Fixes for enter op memory managent in the context of multiple non-nested loops/frames

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* Fix order of operation issues for dependency tracker

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* Always clear op fields after execution to avoid leaks or unintended array reuse

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* Small fixes

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* Re-implement dtype conversion

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* Fix for control dependencies execution (dependency tracking)

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* Fix TF import overrides and filtering

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* Fix for constant enter array dependency tracking

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* DL4J Fixes

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* More DL4J fixes

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* Cleanup and polish

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* More polish and javadoc

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* More logging level tweaks, small DL4J fix

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* Small fix to DL4J SameDiffLayer

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* Fix empty array deserialization, add extra deserialization checks

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* FlatBuffers control dep serialization fixes; test serialization as part of all TF import tests

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* Variable control dependencies serialization fix

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* Fix issue with removing inputs for ops

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* FlatBuffers NDArray deserialization fix

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* FlatBuffers NDArray deserialization fix

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* Small fix

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* Small fix

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* Final cleanup/polish

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2019-10-23 21:19:50 +11:00
Alex Black 130c9aa536
Fixes (#202)
* Remove unnecessary dup in MKLDNNSubsamplingHelper

Signed-off-by: AlexDBlack <blacka101@gmail.com>

* gson dep fix

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2019-08-30 16:36:14 +10:00
Serhii Shepel 0463ee4eba Fix backend dependencies for tests (#189) 2019-08-29 12:54:48 +09:00
Alexander Stoyakin 2e99bc2dee [WIP] Handling binary data in DL4J servlet (#135)
* Binary deser

Signed-off-by: Alexander Stoyakin <alexander.stoyakin@gmail.com>

* Binary mode for servlet

Signed-off-by: Alexander Stoyakin <alexander.stoyakin@gmail.com>

* Added test

Signed-off-by: Alexander Stoyakin <alexander.stoyakin@gmail.com>

* -sRandom image generation copied from datavec

* -sRandom image generation copied from datavec

* Remove serialization constraints

* Fix:

Signed-off-by: Alexander Stoyakin <alexander.stoyakin@gmail.com>

* Removed unused code

Signed-off-by: Alexander Stoyakin <alexander.stoyakin@gmail.com>

* Resources usage

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* Async inference

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* Cleanup

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* -sTest corrected

* Cleanup

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* Mutually eclusive serializers/deserializers

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* Binary output supported

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* Binary out test

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* - types hardcoded
- increased payload size limit

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* change types constant

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2019-08-23 17:00:55 +03:00
Alex Black a5867bb527
Upgrade Jersey to 2.29 (#139)
Signed-off-by: AlexDBlack <blacka101@gmail.com>
2019-08-21 18:34:49 +10:00
raver119 ec847e034b
[WIP] Remote inference (#96)
* fix pad javadoc and @see links. (#72)

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* [WIP] More fixes (#73)

* special tests for ConstantTadHelper/ConstantShapeHelper

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* release methods for data buffers

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* delete temporary buffer Java side

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* delete temporary buffer Java side

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* delete temporary TadPack C++/Java side (#74)

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* Zoo model TF import test updates (#75)

* argLine fix, update compression_gru comment

* updated comment for xception

* undid but commented argLine change

* updated xlnet comment

* copyright headers

* - new NDArray methods like()/ulike() (#77)

- fix for depthwise_conv2d_bp + special test

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* upsampling2d fix CUDA

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* DL4J trace logging (#79)

* MLN/CG trace logging for debugging

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* Tiny tweak

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* strided_slice_bp shape fn leak fix

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* SameDiff fixes and naming (#78)

* remove SDVariable inplace methods

* import methods

* npe fix in OpVal

* removed SameDiff inplace ops from tests

* Naming updates, moved to centralized methods in SameDiff, should use op_#:# for everything

* quick fixes

* javadoc

* SDVariable eval with placeholders

* use regex match

* better matching

* fix javadoc. (#76)

* fix javadoc.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* replace most @see with @link s.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* 4 additional tests

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* Various DL4J/ND4J fixes (#81)

* #7954 Force refresh of UI when switching tabs on overview page

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* #8017 Concurrent modification exception (synchronize) fix

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* #8033 Don't initialize updater in middle of writing memory crash dump

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* #8208 Fix shape checks for ND4J int[] creator methods

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* #6385 #7992 Keras import naming fixes + cleanup

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* #8016 Upsampling3D - add NDHWC format support

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* Refactor NativeOps.h to export C functions

* Actually export functions from NativeOps.h

* Adapt the Java wrappers in ND4J generated with JavaCPP

* Create C wrappers for some of the C++ classes currently used by ND4J

* remove duplicate code in createBufferDetached. (#83)

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* Keras model import - updater lr fix (#84)

* Keras model import - updater lr fix

Signed-off-by: eraly <susan.eraly@gmail.com>

* Keras model import - updater lr fix, cleanup

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* Fix functions of OpaqueVariablesSet

* SameDiff Convolution Config validation, better output methods (#82)

* Conv Config validation & tests

Signed-off-by: Ryan Nett <rnett@skymind.io>

* stackOutputs utility method

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* use constructor for validation, support negative kernel sizes (infered from weights)

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* better output methods

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* move output to be with fit and evaluate

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* fixes

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* more fixes

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* refactor duplicate code from pad methods. (#86)

* refactor duplicate code from pad methods.

Signed-off-by: Robert Altena <Rob@Ra-ai.com>

* replace switch with if.

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* Various ND4J/DL4J fixes and improvements (#87)

* Reshape and reallocate - small fixes

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* Reshape and reallocate - small fixes

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* #6488 ElementWiseVertex broadcast support

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* Constructors and broadcast supported it Transforms.max/min

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* #8054 ElementWiseVertex now supports broadcast inputs

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* #8057 Nd4j.create overload dtype fix

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* #7551 ND4J Shape validation fix

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* [WIP] Numpy boolean import (#91)

* numpy bool type

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* numpy bool java side

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* remove create method with unused parameter. (#89)

* remove create method with unused parameter.

* removed more unused methods.

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* removing more unused code.

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* last removal of unused code.

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* remove createSparse methods. (#92)

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* Various ND4J/DL4J fixes (#90)

* Deprecate Old*Op instances

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* #8063 #8054 Broadcast exceptions + cleanup inplace ops

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* Small fix

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* Remove bad test condition

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* #7993 Fix shape function issue in crop_and_resize op

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* DL4J SameDiff lambda layer fix

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* #8029 Fix for pnorm backprop math

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* #8038 Fix Op profiler NaN/Inf triggering + add tests (#93)

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* createUninitializedDetached refactoring. (#94)

* wip

* update interface, add null implementations.

* Breaking one test in a weird way.

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* createUninitializedDetached refactored.

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* cuda build fix for issues introduced by recent refactoring

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* initial commit

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* deps tweaks

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* initial prototype

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* modules reorganized

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* gprc module moved to nd4j-remote as well

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* gprc module moved to nd4j-remote as well

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* serving prototype

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* serving prototype

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* serving prototype

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* serving prototype

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* [WIP] More of CUDA (#95)

* initial commit

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* Implementation of hashcode cuda helper. Working edition.

* Fixed parallel test input arangements.

* Fixed tests for hashcode op.

* Fixed shape calculation for image:crop_and_resize op and test.

* NativeOps tests. Initial test suite.

* Added tests for indexReduce methods.

* Added test on execBroadcast with NDArray as dimensions.

* Added test on execBroadcastBool with NDArray as dimensions.

* Added tests on execPairwiseTransform and execPairwiseTransofrmBool.

* Added tests for execReduce with scalar results.

* Added reduce tests for non-empty dims array.

* Added tests for reduce3.

* Added tests for execScalar.

* Added tests for execSummaryStats.

* - provide cpu/cuda code for batch_to_space
- testing it

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* - remove old test for batch_to_space (had wrong format and numbers were not checked)

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* Fixed complilation errors with test.

* Added test for execTransformFloat.

* Added test for execTransformSame.

* Added test for execTransformBool.

* Added test for execTransformStrict.

* Added tests for execScalar/execScalarBool with TADs.

* Added test for flatten.

* - provide cpu/cuda code for space_to_Batch operaion

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* Added test for concat.

* comment unnecessary stuff in s_t_b

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* Added test for specialConcat.

* Added tests for memcpy/set routines.

* Fixed pullRow cuda test.

* Added pullRow test.

* Added average test.

* - correct typo in NDArray::applyPairwiseTransform(nd4j::pairwise::BoolOps op...)

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* - debugging and fixing cuda tests in JavaInteropTests file

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* - correct some tests

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* Added test for shuffle.

* Fixed ops declarations.

* Restored omp and added shuffle test.

* Added convertTypes test.

* Added tests for execRandom. Eliminated usage of RandomBuffer with NativeOps.

* Added sort tests.

* Added tests for execCustomOp.

* - further debuging and fixing tests terminated with crash

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* Added tests for calculateOutputShapes.

* Addded Benchmarks test.

* Commented benchmark tests.

* change assertion

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* Added tests for apply_sgd op. Added cpu helper for that op.

* Implement cuda helper for aplly_sgd op. Fixed tests for NativeOps.

* Added test for assign broadcastable.

* Added tests for assign_bp op.

* Added tests for axpy op.

* - assign/execScalar/execTransformAny signature change
- minor test fix

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* Fixed axpy op.

* meh

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* - fix tests for nativeOps::concat

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* sequential transform/scalar

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* allow nested parallelism

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* assign_bp leak fix

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* block setRNG fix

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* enable parallelism by default

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* enable nested parallelism by default

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* Added cuda implementation for row_count helper.

* Added implementation for tnse gains op helper.

* - take into account possible situations when input arrays are empty in reduce_ cuda stuff

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* Implemented tsne/edge_forces op cuda-based helper. Parallelized cpu-based helper for edge_forces.

* Added kernel for tsne/symmetrized op heleper.

* Implementation of tsne/symmetrized op cuda helper. Working edition.

* Eliminated waste printfs.

* Added test for broadcastgradientargs op.

* host-only fallback for empty reduce float

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* - some tests fixes

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* - correct the rest of reduce_ stuff

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* - further correction of reduce_ stuff

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* Added test for Cbow op. Also added cuda implementation for cbow helpers.

* - improve code of stack operation for scalar case

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* - provide cuda kernel for gatherND operation

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* Implementation of cbow helpers with cuda kernels.

* minor tests tweaks

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* minor tests tweaks

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* - further correction of cuda stuff

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* Implementatation of cbow op helper with cuda kernels. Working edition.

* Skip random testing for cudablas case.

* lstmBlockCell context fix

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* Added tests for ELU and ELU_BP ops.

* Added tests for eq_scalar, gt_scalar, gte_scalar and lte_scalar ops.

* Added tests for neq_scalar.

* Added test for noop.

* - further work on clipbynorm_bp

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* - get rid of concat op call, use instead direct concat helper call

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* lstmBlockCell context fix

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* Added tests for lrelu and lrelu_bp.

* Added tests for selu and selu_bp.

* Fixed lrelu derivative helpers.

* - some corrections in lstm

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* operator * result shape fix

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* - correct typo in lstmCell

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* few tests fixed

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* CUDA inverse broadcast bool fix

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* disable MMAP test for CUDA

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* BooleanOp syncToDevice

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* meh

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* additional data types for im2col/col2im

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* Added test for firas_sparse op.

* one more RandomBuffer test excluded

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* Added tests for flatten op.

* Added test for Floor op.

* bunch of tests fixed

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* mmulDot tests fixed

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* more tests fixed

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* Implemented floordiv_bp op and tests.

* Fixed scalar case with cuda implementation for bds.

* - work on cuda kernel for clip_by_norm backprop op is completed

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* Eliminate cbow crach.

* more tests fixed

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* more tests fixed

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* Eliminated abortion with batched nlp test.

* more tests fixed

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* Fixed shared flag initializing.

* disabled bunch of cpu workspaces tests

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* scalar operators fix: missing registerSpecialUse call

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* Fixed logdet for cuda and tests.

* - correct clipBynorm_bp

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* Fixed crop_and_resize shape datatype.

* - correct some mmul tests

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* build fix

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* exclude two methods for JNI

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* exclude two methods for JNI

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* exclude two methods for JNI (#97)

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* temporary stack fix

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* downgrade jetty to latest stable version

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* test and profiles

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* Servlet skeleton

* one test case

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* one test case

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* compilation fix

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* draft improvements

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* draft improvements

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* proof of concept works

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* proof of concept works

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* Servlet

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* logging + simple timing

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* Content type fixed

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* Profile required

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* Servlet tests

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* Post test

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* Tests added:

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* Minor tweaks

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* Constants used

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* Check content type

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* Some tests

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* Errors checking

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* Constraints and tests

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* Minor tweaks

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* Dl4j servlet skeleton

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* Moving class to dl4j

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* Builder extended

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* initial dl4j commit

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* unirest version change

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* temp fallback

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* Reverted unirest version

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* Reverted unirest version

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* revert back unirest version change

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* revert unirest change

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* some additional checks in builder

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* few more fields

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* Test added

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* lombok

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* Tests added

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* deps

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* profiles re-introduced

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* Added tests

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* Model servlet

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* builders

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* builders

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* Servlet skeleton

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* Servlet tests

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* builders

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* get rid of old class

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* use PI for inference

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* superbuilder

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* get back builder

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* Servlet builder

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* PI setup

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* get rid of superbuilder

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* SameDiffServlet inheritance constructor

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* dl4jservlet attached to samediffservlet

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* builder types fix

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* dummy model

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* single out

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* loss

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* Tests added

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* missed builder type

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* working serving example

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* sd model fix

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* fix unirest version

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* More tests

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* Tests added:

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* Minor tests fixes

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* Tests fixed

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* Build fixed

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* Test added

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* Tests fixed

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* Ser/deser added

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* one more unirest fix

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* Custom serializers

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* Tests disabled

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* revert back unirest version change

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* update

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* some default fields values

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* some comments/javadoc

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* - move serde impls to client module
- get rid of INDArray serde for now

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* jackson-based serde for float[], double[] and String

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* more of basic ser/de + tests

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* minor api changes

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* change imports/signatures

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* Optional parralel inference

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* Insert pause between tests as workaround for unavailable port issue

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* few unused imports removed

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* Models usage

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* Models usage

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* - InputAdapter + OutputAdapter = InferenceAdapter
- JsonModelServer now allows separate configuration of InputAdapter and OutputAdapter

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* unused import

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* input adapter..

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* minor signature change

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* few more signatures updated

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* input/output adapter

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* Tests added

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* javadocs added

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* Test fixed

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* minor polishing

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* more of javadoc

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* signature change

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2019-08-14 12:11:09 +03:00