cavis/libnd4j/include/ops/declarable/helpers/cpu/BarnesHutTsne.cpp

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2019-06-06 14:21:15 +02:00
/*******************************************************************************
* Copyright (c) 2015-2018 Skymind, Inc.
*
* This program and the accompanying materials are made available under the
* terms of the Apache License, Version 2.0 which is available at
* https://www.apache.org/licenses/LICENSE-2.0.
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS, WITHOUT
* WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the
* License for the specific language governing permissions and limitations
* under the License.
*
* SPDX-License-Identifier: Apache-2.0
******************************************************************************/
//
// @author George A. Shulinok <sgazeos@gmail.com>, created on 4/18/2019
//
#include <ops/declarable/helpers/BarnesHutTsne.h>
#include <execution/Threads.h>
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namespace nd4j {
namespace ops {
namespace helpers {
Nd4jLong barnes_row_count(const NDArray* rowP, const NDArray* colP, Nd4jLong N, NDArray& rowCounts) {
int* pRowCounts = reinterpret_cast<int*>(rowCounts.buffer());
int const* pRows = reinterpret_cast<int const*>(rowP->getBuffer());
int const* pCols = reinterpret_cast<int const*>(colP->getBuffer());
for (int n = 0; n < N; n++) {
int begin = pRows[n];//->e<int>(n);
int end = pRows[n + 1];//rowP->e<int>(n + 1);
for (int i = begin; i < end; i++) {
bool present = false;
for (int m = pRows[pCols[i]]; m < pRows[pCols[i] + 1]; m++)
if (pCols[m] == n) {
present = true;
break;
}
++pRowCounts[n];
if (!present)
++pRowCounts[pCols[i]];
}
}
NDArray numElementsArr = rowCounts.sumNumber(); //reduceAlongDimension(reduce::Sum, {});
//rowCounts.printBuffer("Row counts");
auto numElements = numElementsArr.e<Nd4jLong>(0);
return numElements;
}
// static
// void printVector(std::vector<int> const& v) {
// for (auto x: v) {
// printf("%d ", x);
// }
// printf("\n");
// fflush(stdout);
// }
template <typename T>
static void barnes_symmetrize_(const NDArray* rowP, const NDArray* colP, const NDArray* valP, Nd4jLong N, NDArray* outputRows, NDArray* outputCols, NDArray* outputVals, NDArray* rowCounts) {
//auto N = rowP->lengthOf() - 1; /// 2 + rowP->lengthOf() % 2;
//auto numElements = output->lengthOf();
//std::vector<int> symRowP = rowCounts->asVectorT<int>();//NDArrayFactory::create<int>('c', {numElements});
//NDArray symValP = NDArrayFactory::create<double>('c', {numElements});
//symRowP.insert(symRowP.begin(),0);
//symRowP(1, {0}) = *rowCounts;
int const* pRows = reinterpret_cast<int const*>(rowP->getBuffer());
int* symRowP = reinterpret_cast<int*>(outputRows->buffer());
symRowP[0] = 0;
for (int n = 0; n < N; n++)
symRowP[n + 1] = symRowP[n] + rowCounts->e<int>(n);
[WIP] More of CUDA (#95) * initial commit Signed-off-by: raver119 <raver119@gmail.com> * Implementation of hashcode cuda helper. Working edition. * Fixed parallel test input arangements. * Fixed tests for hashcode op. * Fixed shape calculation for image:crop_and_resize op and test. * NativeOps tests. Initial test suite. * Added tests for indexReduce methods. * Added test on execBroadcast with NDArray as dimensions. * Added test on execBroadcastBool with NDArray as dimensions. * Added tests on execPairwiseTransform and execPairwiseTransofrmBool. * Added tests for execReduce with scalar results. * Added reduce tests for non-empty dims array. * Added tests for reduce3. * Added tests for execScalar. * Added tests for execSummaryStats. * - provide cpu/cuda code for batch_to_space - testing it Signed-off-by: Yurii <yurii@skymind.io> * - remove old test for batch_to_space (had wrong format and numbers were not checked) Signed-off-by: Yurii <yurii@skymind.io> * Fixed complilation errors with test. * Added test for execTransformFloat. * Added test for execTransformSame. * Added test for execTransformBool. * Added test for execTransformStrict. * Added tests for execScalar/execScalarBool with TADs. * Added test for flatten. * - provide cpu/cuda code for space_to_Batch operaion Signed-off-by: Yurii <yurii@skymind.io> * Added test for concat. * comment unnecessary stuff in s_t_b Signed-off-by: Yurii <yurii@skymind.io> * Added test for specialConcat. * Added tests for memcpy/set routines. * Fixed pullRow cuda test. * Added pullRow test. * Added average test. * - correct typo in NDArray::applyPairwiseTransform(nd4j::pairwise::BoolOps op...) Signed-off-by: Yurii <yurii@skymind.io> * - debugging and fixing cuda tests in JavaInteropTests file Signed-off-by: Yurii <yurii@skymind.io> * - correct some tests Signed-off-by: Yurii <yurii@skymind.io> * Added test for shuffle. * Fixed ops declarations. * Restored omp and added shuffle test. * Added convertTypes test. * Added tests for execRandom. Eliminated usage of RandomBuffer with NativeOps. * Added sort tests. * Added tests for execCustomOp. * - further debuging and fixing tests terminated with crash Signed-off-by: Yurii <yurii@skymind.io> * Added tests for calculateOutputShapes. * Addded Benchmarks test. * Commented benchmark tests. * change assertion Signed-off-by: raver119 <raver119@gmail.com> * Added tests for apply_sgd op. Added cpu helper for that op. * Implement cuda helper for aplly_sgd op. Fixed tests for NativeOps. * Added test for assign broadcastable. * Added tests for assign_bp op. * Added tests for axpy op. * - assign/execScalar/execTransformAny signature change - minor test fix Signed-off-by: raver119 <raver119@gmail.com> * Fixed axpy op. * meh Signed-off-by: raver119 <raver119@gmail.com> * - fix tests for nativeOps::concat Signed-off-by: Yurii <yurii@skymind.io> * sequential transform/scalar Signed-off-by: raver119 <raver119@gmail.com> * allow nested parallelism Signed-off-by: raver119 <raver119@gmail.com> * assign_bp leak fix Signed-off-by: raver119 <raver119@gmail.com> * block setRNG fix Signed-off-by: raver119 <raver119@gmail.com> * enable parallelism by default Signed-off-by: raver119 <raver119@gmail.com> * enable nested parallelism by default Signed-off-by: raver119 <raver119@gmail.com> * Added cuda implementation for row_count helper. * Added implementation for tnse gains op helper. * - take into account possible situations when input arrays are empty in reduce_ cuda stuff Signed-off-by: Yurii <yurii@skymind.io> * Implemented tsne/edge_forces op cuda-based helper. Parallelized cpu-based helper for edge_forces. * Added kernel for tsne/symmetrized op heleper. * Implementation of tsne/symmetrized op cuda helper. Working edition. * Eliminated waste printfs. * Added test for broadcastgradientargs op. * host-only fallback for empty reduce float Signed-off-by: raver119 <raver119@gmail.com> * - some tests fixes Signed-off-by: Yurii <yurii@skymind.io> * - correct the rest of reduce_ stuff Signed-off-by: Yurii <yurii@skymind.io> * - further correction of reduce_ stuff Signed-off-by: Yurii <yurii@skymind.io> * Added test for Cbow op. Also added cuda implementation for cbow helpers. * - improve code of stack operation for scalar case Signed-off-by: Yurii <yurii@skymind.io> * - provide cuda kernel for gatherND operation Signed-off-by: Yurii <yurii@skymind.io> * Implementation of cbow helpers with cuda kernels. * minor tests tweaks Signed-off-by: raver119 <raver119@gmail.com> * minor tests tweaks Signed-off-by: raver119 <raver119@gmail.com> * - further correction of cuda stuff Signed-off-by: Yurii <yurii@skymind.io> * Implementatation of cbow op helper with cuda kernels. Working edition. * Skip random testing for cudablas case. * lstmBlockCell context fix Signed-off-by: raver119 <raver119@gmail.com> * Added tests for ELU and ELU_BP ops. * Added tests for eq_scalar, gt_scalar, gte_scalar and lte_scalar ops. * Added tests for neq_scalar. * Added test for noop. * - further work on clipbynorm_bp Signed-off-by: Yurii <yurii@skymind.io> * - get rid of concat op call, use instead direct concat helper call Signed-off-by: Yurii <yurii@skymind.io> * lstmBlockCell context fix Signed-off-by: raver119 <raver119@gmail.com> * Added tests for lrelu and lrelu_bp. * Added tests for selu and selu_bp. * Fixed lrelu derivative helpers. * - some corrections in lstm Signed-off-by: Yurii <yurii@skymind.io> * operator * result shape fix Signed-off-by: raver119 <raver119@gmail.com> * - correct typo in lstmCell Signed-off-by: Yurii <yurii@skymind.io> * few tests fixed Signed-off-by: raver119 <raver119@gmail.com> * CUDA inverse broadcast bool fix Signed-off-by: raver119 <raver119@gmail.com> * disable MMAP test for CUDA Signed-off-by: raver119 <raver119@gmail.com> * BooleanOp syncToDevice Signed-off-by: raver119 <raver119@gmail.com> * meh Signed-off-by: raver119 <raver119@gmail.com> * additional data types for im2col/col2im Signed-off-by: raver119 <raver119@gmail.com> * Added test for firas_sparse op. * one more RandomBuffer test excluded Signed-off-by: raver119 <raver119@gmail.com> * Added tests for flatten op. * Added test for Floor op. * bunch of tests fixed Signed-off-by: raver119 <raver119@gmail.com> * mmulDot tests fixed Signed-off-by: raver119 <raver119@gmail.com> * more tests fixed Signed-off-by: raver119 <raver119@gmail.com> * Implemented floordiv_bp op and tests. * Fixed scalar case with cuda implementation for bds. * - work on cuda kernel for clip_by_norm backprop op is completed Signed-off-by: Yurii <yurii@skymind.io> * Eliminate cbow crach. * more tests fixed Signed-off-by: raver119 <raver119@gmail.com> * more tests fixed Signed-off-by: raver119 <raver119@gmail.com> * Eliminated abortion with batched nlp test. * more tests fixed Signed-off-by: raver119 <raver119@gmail.com> * Fixed shared flag initializing. * disabled bunch of cpu workspaces tests Signed-off-by: raver119 <raver119@gmail.com> * scalar operators fix: missing registerSpecialUse call Signed-off-by: raver119 <raver119@gmail.com> * Fixed logdet for cuda and tests. * - correct clipBynorm_bp Signed-off-by: Yurii <yurii@skymind.io> * Fixed crop_and_resize shape datatype. * - correct some mmul tests Signed-off-by: Yurii <yurii@skymind.io>
2019-08-02 19:01:03 +02:00
// outputRows->printBuffer("output rows");
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int* symColP = reinterpret_cast<int*>(outputCols->buffer());
// symRowP.p(n + 1, symRowP.e(n) + rowCounts.e(n))
[WIP] More of CUDA (#95) * initial commit Signed-off-by: raver119 <raver119@gmail.com> * Implementation of hashcode cuda helper. Working edition. * Fixed parallel test input arangements. * Fixed tests for hashcode op. * Fixed shape calculation for image:crop_and_resize op and test. * NativeOps tests. Initial test suite. * Added tests for indexReduce methods. * Added test on execBroadcast with NDArray as dimensions. * Added test on execBroadcastBool with NDArray as dimensions. * Added tests on execPairwiseTransform and execPairwiseTransofrmBool. * Added tests for execReduce with scalar results. * Added reduce tests for non-empty dims array. * Added tests for reduce3. * Added tests for execScalar. * Added tests for execSummaryStats. * - provide cpu/cuda code for batch_to_space - testing it Signed-off-by: Yurii <yurii@skymind.io> * - remove old test for batch_to_space (had wrong format and numbers were not checked) Signed-off-by: Yurii <yurii@skymind.io> * Fixed complilation errors with test. * Added test for execTransformFloat. * Added test for execTransformSame. * Added test for execTransformBool. * Added test for execTransformStrict. * Added tests for execScalar/execScalarBool with TADs. * Added test for flatten. * - provide cpu/cuda code for space_to_Batch operaion Signed-off-by: Yurii <yurii@skymind.io> * Added test for concat. * comment unnecessary stuff in s_t_b Signed-off-by: Yurii <yurii@skymind.io> * Added test for specialConcat. * Added tests for memcpy/set routines. * Fixed pullRow cuda test. * Added pullRow test. * Added average test. * - correct typo in NDArray::applyPairwiseTransform(nd4j::pairwise::BoolOps op...) Signed-off-by: Yurii <yurii@skymind.io> * - debugging and fixing cuda tests in JavaInteropTests file Signed-off-by: Yurii <yurii@skymind.io> * - correct some tests Signed-off-by: Yurii <yurii@skymind.io> * Added test for shuffle. * Fixed ops declarations. * Restored omp and added shuffle test. * Added convertTypes test. * Added tests for execRandom. Eliminated usage of RandomBuffer with NativeOps. * Added sort tests. * Added tests for execCustomOp. * - further debuging and fixing tests terminated with crash Signed-off-by: Yurii <yurii@skymind.io> * Added tests for calculateOutputShapes. * Addded Benchmarks test. * Commented benchmark tests. * change assertion Signed-off-by: raver119 <raver119@gmail.com> * Added tests for apply_sgd op. Added cpu helper for that op. * Implement cuda helper for aplly_sgd op. Fixed tests for NativeOps. * Added test for assign broadcastable. * Added tests for assign_bp op. * Added tests for axpy op. * - assign/execScalar/execTransformAny signature change - minor test fix Signed-off-by: raver119 <raver119@gmail.com> * Fixed axpy op. * meh Signed-off-by: raver119 <raver119@gmail.com> * - fix tests for nativeOps::concat Signed-off-by: Yurii <yurii@skymind.io> * sequential transform/scalar Signed-off-by: raver119 <raver119@gmail.com> * allow nested parallelism Signed-off-by: raver119 <raver119@gmail.com> * assign_bp leak fix Signed-off-by: raver119 <raver119@gmail.com> * block setRNG fix Signed-off-by: raver119 <raver119@gmail.com> * enable parallelism by default Signed-off-by: raver119 <raver119@gmail.com> * enable nested parallelism by default Signed-off-by: raver119 <raver119@gmail.com> * Added cuda implementation for row_count helper. * Added implementation for tnse gains op helper. * - take into account possible situations when input arrays are empty in reduce_ cuda stuff Signed-off-by: Yurii <yurii@skymind.io> * Implemented tsne/edge_forces op cuda-based helper. Parallelized cpu-based helper for edge_forces. * Added kernel for tsne/symmetrized op heleper. * Implementation of tsne/symmetrized op cuda helper. Working edition. * Eliminated waste printfs. * Added test for broadcastgradientargs op. * host-only fallback for empty reduce float Signed-off-by: raver119 <raver119@gmail.com> * - some tests fixes Signed-off-by: Yurii <yurii@skymind.io> * - correct the rest of reduce_ stuff Signed-off-by: Yurii <yurii@skymind.io> * - further correction of reduce_ stuff Signed-off-by: Yurii <yurii@skymind.io> * Added test for Cbow op. Also added cuda implementation for cbow helpers. * - improve code of stack operation for scalar case Signed-off-by: Yurii <yurii@skymind.io> * - provide cuda kernel for gatherND operation Signed-off-by: Yurii <yurii@skymind.io> * Implementation of cbow helpers with cuda kernels. * minor tests tweaks Signed-off-by: raver119 <raver119@gmail.com> * minor tests tweaks Signed-off-by: raver119 <raver119@gmail.com> * - further correction of cuda stuff Signed-off-by: Yurii <yurii@skymind.io> * Implementatation of cbow op helper with cuda kernels. Working edition. * Skip random testing for cudablas case. * lstmBlockCell context fix Signed-off-by: raver119 <raver119@gmail.com> * Added tests for ELU and ELU_BP ops. * Added tests for eq_scalar, gt_scalar, gte_scalar and lte_scalar ops. * Added tests for neq_scalar. * Added test for noop. * - further work on clipbynorm_bp Signed-off-by: Yurii <yurii@skymind.io> * - get rid of concat op call, use instead direct concat helper call Signed-off-by: Yurii <yurii@skymind.io> * lstmBlockCell context fix Signed-off-by: raver119 <raver119@gmail.com> * Added tests for lrelu and lrelu_bp. * Added tests for selu and selu_bp. * Fixed lrelu derivative helpers. * - some corrections in lstm Signed-off-by: Yurii <yurii@skymind.io> * operator * result shape fix Signed-off-by: raver119 <raver119@gmail.com> * - correct typo in lstmCell Signed-off-by: Yurii <yurii@skymind.io> * few tests fixed Signed-off-by: raver119 <raver119@gmail.com> * CUDA inverse broadcast bool fix Signed-off-by: raver119 <raver119@gmail.com> * disable MMAP test for CUDA Signed-off-by: raver119 <raver119@gmail.com> * BooleanOp syncToDevice Signed-off-by: raver119 <raver119@gmail.com> * meh Signed-off-by: raver119 <raver119@gmail.com> * additional data types for im2col/col2im Signed-off-by: raver119 <raver119@gmail.com> * Added test for firas_sparse op. * one more RandomBuffer test excluded Signed-off-by: raver119 <raver119@gmail.com> * Added tests for flatten op. * Added test for Floor op. * bunch of tests fixed Signed-off-by: raver119 <raver119@gmail.com> * mmulDot tests fixed Signed-off-by: raver119 <raver119@gmail.com> * more tests fixed Signed-off-by: raver119 <raver119@gmail.com> * Implemented floordiv_bp op and tests. * Fixed scalar case with cuda implementation for bds. * - work on cuda kernel for clip_by_norm backprop op is completed Signed-off-by: Yurii <yurii@skymind.io> * Eliminate cbow crach. * more tests fixed Signed-off-by: raver119 <raver119@gmail.com> * more tests fixed Signed-off-by: raver119 <raver119@gmail.com> * Eliminated abortion with batched nlp test. * more tests fixed Signed-off-by: raver119 <raver119@gmail.com> * Fixed shared flag initializing. * disabled bunch of cpu workspaces tests Signed-off-by: raver119 <raver119@gmail.com> * scalar operators fix: missing registerSpecialUse call Signed-off-by: raver119 <raver119@gmail.com> * Fixed logdet for cuda and tests. * - correct clipBynorm_bp Signed-off-by: Yurii <yurii@skymind.io> * Fixed crop_and_resize shape datatype. * - correct some mmul tests Signed-off-by: Yurii <yurii@skymind.io>
2019-08-02 19:01:03 +02:00
// outputRows->printBuffer("SymRows are");
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int const* pCols = reinterpret_cast<int const*>(colP->getBuffer());
T const* pVals = reinterpret_cast<T const*>(valP->getBuffer());
T* pOutput = reinterpret_cast<T*>(outputVals->buffer());
//std::vector<int> rowCountsV = rowCounts->getBufferAsVector<int>();
std::vector<int> offset(N);// = NDArrayFactory::create<int>('c', {N});
//PRAGMA_OMP_PARALLEL_FOR_SIMD_ARGS(schedule(guided) shared(offset))
for (int n = 0; n < N; n++) {
int begin = pRows[n];
int bound = pRows[n + 1];
for (int i = begin; i < bound; i++) {
bool present = false;
int colPI = pCols[i];
int start = pRows[colPI];
int end = pRows[colPI + 1];
//PRAGMA_OMP_PARALLEL_FOR_ARGS(schedule(guided) firstprivate(offset))
for (int m = start; m < end; m++) {
if (pCols[m] == n) {
present = true;
if (n <= colPI) {
symColP[symRowP[n] + offset[n]] = colPI;
symColP[symRowP[colPI] + offset[colPI]] = n;
pOutput[symRowP[n] + offset[n]] = pVals[i] + pVals[m];
pOutput[symRowP[colPI] + offset[colPI]] = pVals[i] + pVals[m];
}
}
}
// If (colP[i], n) is not present, there is no addition involved
if (!present) {
//int colPI = pCols[i];
//if (n <= colPI) {
symColP[symRowP[n] + offset[n]] = colPI;
symColP[symRowP[pCols[i]] + offset[colPI]] = n;
pOutput[symRowP[n] + offset[n]] = pVals[i];
pOutput[symRowP[colPI] + offset[colPI]] = pVals[i];
//}
}
// Update offsets
if (!present || (present && n <= colPI)) {
++offset[n];
if (colPI != n)
++offset[colPI];
}
// printVector(offset);
}
}
}
void barnes_symmetrize(const NDArray* rowP, const NDArray* colP, const NDArray* valP, Nd4jLong N, NDArray* outputRows, NDArray* outputCols, NDArray* outputVals, NDArray* rowCounts) {
// Divide the result by two
BUILD_SINGLE_SELECTOR(valP->dataType(), barnes_symmetrize_, (rowP, colP, valP, N, outputRows, outputCols, outputVals, rowCounts), NUMERIC_TYPES);
*outputVals /= 2.0;
//output->assign(symValP);
}
BUILD_SINGLE_TEMPLATE(template void barnes_symmetrize_, (const NDArray* rowP, const NDArray* colP, const NDArray* valP, Nd4jLong N, NDArray* outputRows, NDArray* outputCols, NDArray* outputVals, NDArray* rowCounts), NUMERIC_TYPES);
template <typename T>
static void barnes_edge_forces_(const NDArray* rowP, NDArray const* colP, NDArray const* valP, int N, NDArray const* data, NDArray* output) {
T const* dataP = reinterpret_cast<T const*>(data->getBuffer());
T const* vals = reinterpret_cast<T const*>(valP->getBuffer());
T* outputP = reinterpret_cast<T*>(output->buffer());
int colCount = data->columns();
[WIP] More of CUDA (#95) * initial commit Signed-off-by: raver119 <raver119@gmail.com> * Implementation of hashcode cuda helper. Working edition. * Fixed parallel test input arangements. * Fixed tests for hashcode op. * Fixed shape calculation for image:crop_and_resize op and test. * NativeOps tests. Initial test suite. * Added tests for indexReduce methods. * Added test on execBroadcast with NDArray as dimensions. * Added test on execBroadcastBool with NDArray as dimensions. * Added tests on execPairwiseTransform and execPairwiseTransofrmBool. * Added tests for execReduce with scalar results. * Added reduce tests for non-empty dims array. * Added tests for reduce3. * Added tests for execScalar. * Added tests for execSummaryStats. * - provide cpu/cuda code for batch_to_space - testing it Signed-off-by: Yurii <yurii@skymind.io> * - remove old test for batch_to_space (had wrong format and numbers were not checked) Signed-off-by: Yurii <yurii@skymind.io> * Fixed complilation errors with test. * Added test for execTransformFloat. * Added test for execTransformSame. * Added test for execTransformBool. * Added test for execTransformStrict. * Added tests for execScalar/execScalarBool with TADs. * Added test for flatten. * - provide cpu/cuda code for space_to_Batch operaion Signed-off-by: Yurii <yurii@skymind.io> * Added test for concat. * comment unnecessary stuff in s_t_b Signed-off-by: Yurii <yurii@skymind.io> * Added test for specialConcat. * Added tests for memcpy/set routines. * Fixed pullRow cuda test. * Added pullRow test. * Added average test. * - correct typo in NDArray::applyPairwiseTransform(nd4j::pairwise::BoolOps op...) Signed-off-by: Yurii <yurii@skymind.io> * - debugging and fixing cuda tests in JavaInteropTests file Signed-off-by: Yurii <yurii@skymind.io> * - correct some tests Signed-off-by: Yurii <yurii@skymind.io> * Added test for shuffle. * Fixed ops declarations. * Restored omp and added shuffle test. * Added convertTypes test. * Added tests for execRandom. Eliminated usage of RandomBuffer with NativeOps. * Added sort tests. * Added tests for execCustomOp. * - further debuging and fixing tests terminated with crash Signed-off-by: Yurii <yurii@skymind.io> * Added tests for calculateOutputShapes. * Addded Benchmarks test. * Commented benchmark tests. * change assertion Signed-off-by: raver119 <raver119@gmail.com> * Added tests for apply_sgd op. Added cpu helper for that op. * Implement cuda helper for aplly_sgd op. Fixed tests for NativeOps. * Added test for assign broadcastable. * Added tests for assign_bp op. * Added tests for axpy op. * - assign/execScalar/execTransformAny signature change - minor test fix Signed-off-by: raver119 <raver119@gmail.com> * Fixed axpy op. * meh Signed-off-by: raver119 <raver119@gmail.com> * - fix tests for nativeOps::concat Signed-off-by: Yurii <yurii@skymind.io> * sequential transform/scalar Signed-off-by: raver119 <raver119@gmail.com> * allow nested parallelism Signed-off-by: raver119 <raver119@gmail.com> * assign_bp leak fix Signed-off-by: raver119 <raver119@gmail.com> * block setRNG fix Signed-off-by: raver119 <raver119@gmail.com> * enable parallelism by default Signed-off-by: raver119 <raver119@gmail.com> * enable nested parallelism by default Signed-off-by: raver119 <raver119@gmail.com> * Added cuda implementation for row_count helper. * Added implementation for tnse gains op helper. * - take into account possible situations when input arrays are empty in reduce_ cuda stuff Signed-off-by: Yurii <yurii@skymind.io> * Implemented tsne/edge_forces op cuda-based helper. Parallelized cpu-based helper for edge_forces. * Added kernel for tsne/symmetrized op heleper. * Implementation of tsne/symmetrized op cuda helper. Working edition. * Eliminated waste printfs. * Added test for broadcastgradientargs op. * host-only fallback for empty reduce float Signed-off-by: raver119 <raver119@gmail.com> * - some tests fixes Signed-off-by: Yurii <yurii@skymind.io> * - correct the rest of reduce_ stuff Signed-off-by: Yurii <yurii@skymind.io> * - further correction of reduce_ stuff Signed-off-by: Yurii <yurii@skymind.io> * Added test for Cbow op. Also added cuda implementation for cbow helpers. * - improve code of stack operation for scalar case Signed-off-by: Yurii <yurii@skymind.io> * - provide cuda kernel for gatherND operation Signed-off-by: Yurii <yurii@skymind.io> * Implementation of cbow helpers with cuda kernels. * minor tests tweaks Signed-off-by: raver119 <raver119@gmail.com> * minor tests tweaks Signed-off-by: raver119 <raver119@gmail.com> * - further correction of cuda stuff Signed-off-by: Yurii <yurii@skymind.io> * Implementatation of cbow op helper with cuda kernels. Working edition. * Skip random testing for cudablas case. * lstmBlockCell context fix Signed-off-by: raver119 <raver119@gmail.com> * Added tests for ELU and ELU_BP ops. * Added tests for eq_scalar, gt_scalar, gte_scalar and lte_scalar ops. * Added tests for neq_scalar. * Added test for noop. * - further work on clipbynorm_bp Signed-off-by: Yurii <yurii@skymind.io> * - get rid of concat op call, use instead direct concat helper call Signed-off-by: Yurii <yurii@skymind.io> * lstmBlockCell context fix Signed-off-by: raver119 <raver119@gmail.com> * Added tests for lrelu and lrelu_bp. * Added tests for selu and selu_bp. * Fixed lrelu derivative helpers. * - some corrections in lstm Signed-off-by: Yurii <yurii@skymind.io> * operator * result shape fix Signed-off-by: raver119 <raver119@gmail.com> * - correct typo in lstmCell Signed-off-by: Yurii <yurii@skymind.io> * few tests fixed Signed-off-by: raver119 <raver119@gmail.com> * CUDA inverse broadcast bool fix Signed-off-by: raver119 <raver119@gmail.com> * disable MMAP test for CUDA Signed-off-by: raver119 <raver119@gmail.com> * BooleanOp syncToDevice Signed-off-by: raver119 <raver119@gmail.com> * meh Signed-off-by: raver119 <raver119@gmail.com> * additional data types for im2col/col2im Signed-off-by: raver119 <raver119@gmail.com> * Added test for firas_sparse op. * one more RandomBuffer test excluded Signed-off-by: raver119 <raver119@gmail.com> * Added tests for flatten op. * Added test for Floor op. * bunch of tests fixed Signed-off-by: raver119 <raver119@gmail.com> * mmulDot tests fixed Signed-off-by: raver119 <raver119@gmail.com> * more tests fixed Signed-off-by: raver119 <raver119@gmail.com> * Implemented floordiv_bp op and tests. * Fixed scalar case with cuda implementation for bds. * - work on cuda kernel for clip_by_norm backprop op is completed Signed-off-by: Yurii <yurii@skymind.io> * Eliminate cbow crach. * more tests fixed Signed-off-by: raver119 <raver119@gmail.com> * more tests fixed Signed-off-by: raver119 <raver119@gmail.com> * Eliminated abortion with batched nlp test. * more tests fixed Signed-off-by: raver119 <raver119@gmail.com> * Fixed shared flag initializing. * disabled bunch of cpu workspaces tests Signed-off-by: raver119 <raver119@gmail.com> * scalar operators fix: missing registerSpecialUse call Signed-off-by: raver119 <raver119@gmail.com> * Fixed logdet for cuda and tests. * - correct clipBynorm_bp Signed-off-by: Yurii <yurii@skymind.io> * Fixed crop_and_resize shape datatype. * - correct some mmul tests Signed-off-by: Yurii <yurii@skymind.io>
2019-08-02 19:01:03 +02:00
// auto shift = 0;
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auto rowSize = sizeof(T) * colCount;
auto func = PRAGMA_THREADS_FOR {
for (auto n = start; n < stop; n++) {
int s = rowP->e<int>(n);
int end = rowP->e<int>(n + 1);
int shift = n * colCount;
for (int i = s; i < end; i++) {
T const *thisSlice = dataP + colP->e<int>(i) * colCount;
T res = 1;
for (int k = 0; k < colCount; k++) {
auto tempVal = dataP[shift + k] - thisSlice[k];//thisSlice[k];
res += tempVal * tempVal;
}
res = vals[i] / res;
for (int k = 0; k < colCount; k++)
outputP[shift + k] += ((dataP[shift + k] - thisSlice[k]) * res);
}
//shift += colCount;
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}
};
samediff::Threads::parallel_tad(func, 0, N);
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}
void barnes_edge_forces(const NDArray* rowP, NDArray const* colP, NDArray const* valP, int N, NDArray* output, NDArray const& data) {
// Loop over all edges in the graph
BUILD_SINGLE_SELECTOR(output->dataType(), barnes_edge_forces_, (rowP, colP, valP, N, &data, output), FLOAT_TYPES);
}
BUILD_SINGLE_TEMPLATE(template void barnes_edge_forces_, (const NDArray* rowP, NDArray const* colP, NDArray const* valP, int N, NDArray const* data, NDArray* output), FLOAT_TYPES);
template <typename T>
static void barnes_gains_(NDArray* input, NDArray* gradX, NDArray* epsilon, NDArray* output) {
// gains = gains.add(.2).muli(sign(yGrads)).neq(sign(yIncs)).castTo(Nd4j.defaultFloatingPointType())
// .addi(gains.mul(0.8).muli(sign(yGrads)).neq(sign(yIncs)));
auto gainsInternal = LAMBDA_TTT(x, grad, eps) {
// return T((x + 2.) * nd4j::math::nd4j_sign<T,T>(grad) != nd4j::math::nd4j_sign<T,T>(eps)) + T(x * 0.8 * nd4j::math::nd4j_sign<T,T>(grad) != nd4j::math::nd4j_sign<T,T>(eps));
//return T((x + 2.) * nd4j::math::nd4j_sign<T,T>(grad) == nd4j::math::nd4j_sign<T,T>(eps)) + T(x * 0.8 * nd4j::math::nd4j_sign<T,T>(grad) == nd4j::math::nd4j_sign<T,T>(eps));
T res = nd4j::math::nd4j_sign<T,T>(grad) != nd4j::math::nd4j_sign<T,T>(eps) ? x + T(.2) : x * T(.8);
if(res < .01) res = .01;
return res;
};
Shyrma temp (#131) * - specifying template instantiation for certain types in float16 and bloat16 Signed-off-by: Yurii <iuriish@yahoo.com> * - polishing bfloat16 and float16 member functions template specialization Signed-off-by: Yurii <iuriish@yahoo.com> * - rewrite and overload array +-*/ scalar and scalar +-*/ arr in NDAray class Signed-off-by: Yurii <iuriish@yahoo.com> * - make corrections which have to do with and rvalue lvalue conversions Signed-off-by: Yurii <iuriish@yahoo.com> * - provide move semantic in NDArray operators array +-/* array Signed-off-by: Yurii <iuriish@yahoo.com> * float16/bfloat16 tweaks Signed-off-by: raver119 <raver119@gmail.com> * one more tweak Signed-off-by: raver119 <raver119@gmail.com> * - make float16 and bfloat16 to compile successfully on cuda Signed-off-by: Yurii <iuriish@yahoo.com> * - do not use resources of view-like arrays when move semantics is applied Signed-off-by: Yurii <iuriish@yahoo.com> * - get rid of pointers in signatures NDArray methods 1 Signed-off-by: Yurii <iuriish@yahoo.com> * - correction of signature of NDArray::dup method Signed-off-by: Yurii <iuriish@yahoo.com> * - correction of signature of NDArray::reduceAlongDimension method Signed-off-by: Yurii <iuriish@yahoo.com> * - signature correction of NDArray::applyIndexReduce and applyTrueBroadcast methods Signed-off-by: Yurii <iuriish@yahoo.com> * - signature correction of NDArray::applyReduce3 and varianceAlongDimension methods Signed-off-by: Yurii <iuriish@yahoo.com> * - signature correction of NDArray::tensorsAlongDimension and diagonal methods Signed-off-by: Yurii <iuriish@yahoo.com> * - signature correction of NDArray::allTensorsAlongDimension Signed-off-by: Yurii <iuriish@yahoo.com> * - signature correction of NDArray::reduceAlongDimension 2 Signed-off-by: Yurii <iuriish@yahoo.com> * - signature correction of NDArray::applyTransform 2 Signed-off-by: Yurii <iuriish@yahoo.com> * - signature correction of NDArray::applyPairwiseTransform 2 Signed-off-by: Yurii <iuriish@yahoo.com> * - signature correction of NDArray::applyBroadcast 2 Signed-off-by: Yurii <iuriish@yahoo.com> * - signature correction of NDArray::applyTrueBroadcast 2 Signed-off-by: Yurii <iuriish@yahoo.com> * - signature correction of NDArray::applyScalar and applyScalarArr Signed-off-by: Yurii <iuriish@yahoo.com> * - signature correction of NDArray::lambda methods Signed-off-by: Yurii <iuriish@yahoo.com> * - signature correction of NDArray::reduce3 methods 2 Signed-off-by: Yurii <iuriish@yahoo.com> * - signature correction of following NDArray methods: add/sub/mul/div row/column and fillAsTriangular Signed-off-by: Yurii <iuriish@yahoo.com> * - signature correction of NDArray::tileToShape methods Signed-off-by: Yurii <iuriish@yahoo.com> * - signature correction of NDArray::isShapeSameStrict method Signed-off-by: Yurii <iuriish@yahoo.com> * minor corrections in tests Signed-off-by: Yurii <iuriish@yahoo.com> * - replace reduce op in batchnorm mkldnn Signed-off-by: Yurii <iuriish@yahoo.com> * - add explicit templates instantiations for operator+(NDArray&&. const scalar) Signed-off-by: Yurii <iuriish@yahoo.com> * - corrections of casts in float16/bfloat16 Signed-off-by: Yurii <iuriish@yahoo.com> * - provide move semantics in following NDArray methods: transform, applyTrueBroadcast, transpose, reshape, permute Signed-off-by: Yurii <iuriish@yahoo.com> * - get rid of input array A duplicate in svd cuda op Signed-off-by: Yurii <iuriish@yahoo.com> * - avoid available bug in svd cuda API Signed-off-by: Yurii <iuriish@yahoo.com> * - add temporary global memory buffer in svd cuda when calcUV = false and m != n Signed-off-by: Yurii <iuriish@yahoo.com> * - remove test with blfoat16 type for betainC Signed-off-by: Yurii <iuriish@yahoo.com> * - resolve conflicts after master has been merged in Signed-off-by: Yurii <iuriish@yahoo.com> * - changed type of affected input array in fused_batch_norm Signed-off-by: Yurii <iuriish@yahoo.com> * - add several explicit type castings Signed-off-by: Yurii <iuriish@yahoo.com> * - add ND4J_EXPORT to operators Signed-off-by: Yurii <iuriish@yahoo.com> * - add explicit template types in instantiations of template arithm operators of NDArray class Signed-off-by: Yurii <iuriish@yahoo.com> * - one more test fix Signed-off-by: Yurii <iuriish@yahoo.com> Co-authored-by: raver119 <raver119@gmail.com>
2019-12-20 20:35:39 +01:00
input->applyTriplewiseLambda<T>(*gradX, *epsilon, gainsInternal, *output);
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}
void barnes_gains(NDArray* input, NDArray* gradX, NDArray* epsilon, NDArray* output) {
// gains = gains.add(.2).muli(sign(yGrads)).neq(sign(yIncs)).castTo(Nd4j.defaultFloatingPointType())
// .addi(gains.mul(0.8).muli(sign(yGrads)).neq(sign(yIncs)));
BUILD_SINGLE_SELECTOR(input->dataType(), barnes_gains_, (input, gradX, epsilon, output), NUMERIC_TYPES);
// auto signGradX = *gradX;
// auto signEpsilon = *epsilon;
// gradX->applyTransform(transform::Sign, &signGradX, nullptr);
// epsilon->applyTransform(transform::Sign, &signEpsilon, nullptr);
// auto leftPart = (*input + 2.) * signGradX;
// auto leftPartBool = NDArrayFactory::create<bool>(leftPart.ordering(), leftPart.getShapeAsVector());
//
// leftPart.applyPairwiseTransform(pairwise::NotEqualTo, &signEpsilon, &leftPartBool, nullptr);
// auto rightPart = *input * 0.8 * signGradX;
// auto rightPartBool = NDArrayFactory::create<bool>(rightPart.ordering(), rightPart.getShapeAsVector());
// rightPart.applyPairwiseTransform(pairwise::NotEqualTo, &signEpsilon, &rightPartBool, nullptr);
// leftPart.assign(leftPartBool);
// rightPart.assign(rightPartBool);
// leftPart.applyPairwiseTransform(pairwise::Add, &rightPart, output, nullptr);
}
BUILD_SINGLE_TEMPLATE(template void barnes_gains_, (NDArray* input, NDArray* gradX, NDArray* epsilon, NDArray* output), NUMERIC_TYPES);
bool cell_contains(NDArray* corner, NDArray* width, NDArray* point, Nd4jLong dimension) {
auto cornerMinusWidth = *corner - *width;
auto cornerPlusWidth = *corner + *width;
for (Nd4jLong i = 0; i < dimension; i++) {
if (cornerMinusWidth.e<double>(i) > point->e<double>(i))
return false;
if (cornerPlusWidth.e<double>(i) < point->e<double>(i))
return false;
}
return true;
}
}
}
}